PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023533.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 382aa    MW: 43565.9 Da    PI: 4.9718
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023533.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0692115226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C+ G +CkF+H+
  Do023533.1  92 KSILCEFFKA-GQCQKGFKCKFSHD 115
                 6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-690115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27290117IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-590116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-492116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.652172210IPR000571Zinc finger, CCCH-type
SMARTSM003561.3173209IPR000571Zinc finger, CCCH-type
PfamPF165431.5E-15229305IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPPKKAAPSK AELAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQAVQPK PDPTKTATKK  60
KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSILCEFFK AGQCQKGFKC KFSHDLNVQR  120
KGEKIDIYTD KRDAETMEDW DQETLEKVVE SKRTEYQQNK PTDIVCTTLS LLPYSAVCKY  180
FLDAVEKKQY GWFWVCPNGG KDCHYRHALP PGYVLKSQMK ALLEEESEKI AIEDEIEDQR  240
KKTKTTTPMT TELFMLWKRK KAEEREAGQA ALKAERAKND RMSGRELFMA DASVFVDDAE  300
AYEVYEREKE HEANEESSKK SQDAGPSSST SNGKEVEEPD DEDEDEDIDL DDDLDIDELN  360
ELEASLSRTS IQIREPGEGT SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239260RKKTKTTTPMTTELFMLWKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628980.0EU962898.1 Zea mays clone 246367 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646456.20.0PREDICTED: zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A1E5UUT40.0A0A1E5UUT4_9POAL; Zinc finger CCCH domain-containing protein 11
STRINGOB01G45080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]