PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023049.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 401aa    MW: 44789.4 Da    PI: 6.5916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023049.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.6e-07149172123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C  Cg++F+++ +L+rH r  H
  Do023049.1 149 YSCAVCGRRFPTRPDLTRHFRQlH 172
                 99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-5147175No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4148175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4149172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10101.3E-5177288IPR029060PIN domain-like
CDDcd061679.98E-10192299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MPLALSFLHL PLNPAPLHPF RIHRTQQSHP LLSLRTRRAS VVATAEAENP SAPVDVDMVR  60
GRDGVWTARS PTVVVLWDLD NKPPRGPPFP AATSLIAAAS LLGRVVSISA FANRHAFSHL  120
PSWVAAERRD RRALDRAERA GTAAPSVPYS CAVCGRRFPT RPDLTRHFRQ LHERERNKKL  180
SRLHSLKGKK RQKYRERFIS GNTKYEDAAR ELLTPKVGYR LASELRRAGV QVRTVPDKPQ  240
AADHALKRQV KHSVACGVDW MVLVSDDSDF TDTVRNARAA DLRTVVVGDG CRALGKVADI  300
WLPWDRVENG EVDEEMLRSC TLSEFGEDQE DERGEEFVLD WDASDLDNVV DDIVGMRTSF  360
LGATTISAFA DEDFTDGIFG VELNGDSLFW SSDNDEEDGY L
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810356.10.0uncharacterized protein LOC112888367
TrEMBLA0A1E5VTE60.0A0A1E5VTE6_9POAL; Uncharacterized protein
STRINGPavir.Da02143.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-104C2H2-like zinc finger protein