 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do023022.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
bHLH |
Protein Properties |
Length: 256aa MW: 28162.8 Da PI: 5.7938 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do023022.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 48.4 | 1.7e-15 | 89 | 135 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h e+Er+RRdr+N +f Lr +P +++Ka+iLe Av YI++L
Do023022.1 89 MSHVEAERQRRDRLNRRFCDLRAAVPRV-----SRMDKASILEDAVSYISEL 135
68*************************5.....4****************99 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MDEFVWPAAS CGPLFPESCF SAVSHHQRPA LEFMPCHDVP EQWLLGDDVL DKHDNEEELQ 60 DGRAIQTPPA PLVERSRRKP GPRTDGSAMS HVEAERQRRD RLNRRFCDLR AAVPRVSRMD 120 KASILEDAVS YISELRGRVE QLEEAAAEAR RMTTASPLAH YALFGGSSDQ ENTALEARMI 180 GPEEAALHLT TTAARHAPAR LMAALRALDL PVQHACVCRL GGVTVQDVVV DVPSAGLRED 240 GRLRAALHGL LLQESG
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_B | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_E | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_F | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_G | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_I | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_M | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
5gnj_N | 5e-17 | 89 | 143 | 7 | 61 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040679 | 1e-44 | BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds. |
GenBank | KJ726787 | 1e-44 | KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds. |
GenBank | KJ728281 | 1e-44 | KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds. |