PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do022953.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 529aa MW: 54778.2 Da PI: 9.3219

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022953.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Do022953.1 64 FVCEVCNKGFQREQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	13.2	0.00026	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Do022953.1 140 WKCDKCNKRYAVQSDWKAHSKTC 162 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-7	63	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-6	63	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0041	64	86	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	64	86	IPR007087	Zinc finger, C2H2
Pfam	PF12171	3.4E-5	64	86	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	66	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	105	135	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.9E-5	128	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.96E-7	135	160	No hit	No description
SMART	SM00355	110	140	160	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MAAASSAHLF GLGDAQMQPP LPQQAAPPPP PAAAPAPKKK RNQPDPDAEV IALSPKTLMA 60 TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNPKET RRRVYLCPEP TCVHHDPSRA 120 LGDLTGIKKH YCRKHGEKKW KCDKCNKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS 180 FITHRAFCDA LAQESARVPP IGAGMYGSGG MALGLSGMAA SQLQSFQDQG HSSATTAISG 240 NPAAQFEHLM SSSAGSPAFR AAQSASSSSS PFYLGGAEDG HQSQPGHTSL LHGKPAFHGL 300 MQLPEQHGQL NLGFFSGASS GQDARLVFPD QFNGATGGNG RGEHGNSGAN TESAAIFSGN 360 IMGNQMASGG GGGFSSSLYN STETVAPPQM SATALLQKAA QMGATTCGGG GGSVNSLLRG 420 LGSGGALNGR PAGAAGFMAG ESSSRSNSQA ENESQFRDLM NSLAASGSGA GGASAFSGGF 480 PGMDDSKLST RDFLGVGGGV VRSLSGAAGL PLRHGAAGIG MGSLDPEMK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MAAASSAHLF GLGDAQMQPP LPQQAAPPPP PAAAPAPKKK RNQPDPDAEV IALSPKTLMA  60
TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNPKET RRRVYLCPEP TCVHHDPSRA  120
LGDLTGIKKH YCRKHGEKKW KCDKCNKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS  180
FITHRAFCDA LAQESARVPP IGAGMYGSGG MALGLSGMAA SQLQSFQDQG HSSATTAISG  240
NPAAQFEHLM SSSAGSPAFR AAQSASSSSS PFYLGGAEDG HQSQPGHTSL LHGKPAFHGL  300
MQLPEQHGQL NLGFFSGASS GQDARLVFPD QFNGATGGNG RGEHGNSGAN TESAAIFSGN  360
IMGNQMASGG GGGFSSSLYN STETVAPPQM SATALLQKAA QMGATTCGGG GGSVNSLLRG  420
LGSGGALNGR PAGAAGFMAG ESSSRSNSQA ENESQFRDLM NSLAASGSGA GGASAFSGGF  480
PGMDDSKLST RDFLGVGGGV VRSLSGAAGL PLRHGAAGIG MGSLDPEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	136	198	3	65	Zinc finger protein JACKDAW
5b3h_F	1e-33	136	198	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022953.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008649023.1	0.0	uncharacterized protein LOC542697 isoform X7
Swissprot	Q9ZUL3	1e-121	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A1E5UWE6	0.0	A0A1E5UWE6_9POAL; Protein indeterminate-domain 5, chloroplastic
STRING	Pavir.Fb02381.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-108	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]