PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do022940.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 298aa MW: 31163.1 Da PI: 8.6247

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022940.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk F + L H ++H Do022940.1 149 FRCAVCGKAFASYQALGGHKSSH 171 89**********99999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.1E-12	148	173	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	149	171	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.679	149	176	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.34E-8	149	171	No hit	No description
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.34E-8	206	233	No hit	No description
SMART	SM00355	0.91	211	233	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.078	211	238	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.8E-10	211	234	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	213	233	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MFDSTTSSLA SPNLSLPSLA PGFPCCPYIY THLPSPIHRS PAATACPRES PRPKQQHHQS 60 TTRVFISCTV SAMVAGLEAL LDPTALSLAL PAPELKKEDY XAICLAALAG TRGTGLKAAG 120 LFGQPHQGKW CPPPPPAAAP ALAQEELRFR CAVCGKAFAS YQALGGHKSS HRKPPTGEQY 180 AAAVAVVAQA TADSEETTSS SGGGATTGGP HRCTICRRGF ATGQALGGHK RCHYWDGSSV 240 SVSLSASASA SGTGSSGITV RNFDLNLIPV PENAGMKRWV EEEEVQSPLP IKKRRMSD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269\|PubMed:25071223}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022940.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269\|PubMed:25071223}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094070	2e-37	FP094070.1 Phyllostachys edulis cDNA clone: bphyem106f16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797129.1	1e-107	zinc finger protein 36-like
Swissprot	Q75KE5	4e-77	ZFP36_ORYSJ; Zinc finger protein 36
TrEMBL	A0A1E5V0H2	0.0	A0A1E5V0H2_9POAL; Uncharacterized protein
STRING	Pavir.J37325.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3412	32	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04340.1	4e-24	zinc finger of Arabidopsis thaliana 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang H, et al. A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice. J. Exp. Bot., 2014. 65(20): p. 5795-809 [PMID:25071223] Li W, et al. A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance. Cell, 2017. 170(1): p. 114-126.e15 [PMID:28666113]