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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do022803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 283aa MW: 30097.8 Da PI: 6.8809 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.9 | 3.1e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvh++FGasnv+kll++lp+ +reda++sl+yeAear+rdPvyG+v+ i+ lq +++q++ ela++++ Do022803.1 7 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFANVHRVFGASNVSKLLNELPQAQREDAVNSLAYEAEARLRDPVYGCVSYISVLQLRIKQTRDELAAARK 105 7**********************************************************************************************9998 PP DUF260 100 e 100 e Do022803.1 106 E 106 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.53 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFANVH RVFGASNVSK LLNELPQAQR 60 EDAVNSLAYE AEARLRDPVY GCVSYISVLQ LRIKQTRDEL AAARKELAGY IGPAAFAPFV 120 APPQYHHHQY AGVPLAAAGM GLGVAPQHSH HPHQQIMAVQ QQHLHHQQMA EAQQIAAAVE 180 VAREQDFMMR QAAAYAHAIP GSSAGATVAV VPPDAVPYEG GFLFQQQQPP PSQAQTAVAL 240 TYQMEQSPPP SSSGQSHPEV SHQQNTDGSD EGSGGGGVVA PPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-49 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-49 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do022803.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368134 | 1e-109 | AK368134.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068L23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704292.1 | 1e-144 | LOB domain-containing protein 6 | ||||
Swissprot | Q9FKZ3 | 2e-61 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A1E5VYJ4 | 0.0 | A0A1E5VYJ4_9POAL; LOB domain-containing protein 36 | ||||
STRING | Si036905m | 1e-143 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-57 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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