PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 479aa MW: 52043.1 Da PI: 6.026

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022479.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	75.2	8.7e-24	178	227	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ Do022479.1 178 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQ 227 6799***************.**************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.135	175	234	IPR017930	Myb domain
SuperFamily	SSF46689	5.55E-15	176	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-22	176	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-23	178	227	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-6	181	227	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0009658	Biological Process	chloroplast organization
GO:0009910	Biological Process	negative regulation of flower development
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0010638	Biological Process	positive regulation of organelle organization
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MLAVVSPVRC ADAEEFSGGA GTEMEEIGPV SDLDFDFTVD DIDFGDFFLR LEDGDALPDL 60 EVDPTEIFTD FEAIANGGDG VTDQEVPTVQ PLADAVHLDP VDPCSGVLAE ENTTHALVEE 120 GKIECNHGEE VAAGNNGDFG GSRGTVLAEK SPSSTTSSSQ EAENRHKSSS KHSQGKKKAK 180 VDWTPELHRR FVQAVEQLGI DKAVPSRILE IMGIDSLTRH NIASHLQWDL LLTIKSKKRS 240 VCVNNLLCKL VQKYRSHRKH MLAREAEAAS WTQRRQMYAA RGAPAAVKRP DSNAWTVPTI 300 GFPPPPPPPP PHPMQHFSRP LHVWGHPTPA VESPRVPMWP RHLVPRAPTP PWAPPLSDPA 360 FWHHPYMRGP AHMPGQVAPC VAVPMPAARF PAPPVRGILP CPPPMYRPLV PPALTSKSQQ 420 DTQLQLQTQP SSESIDAAIG DVISKPWLPL PLGLKPPSVD SVMGELQRQG VADVPPACG

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MLAVVSPVRC ADAEEFSGGA GTEMEEIGPV SDLDFDFTVD DIDFGDFFLR LEDGDALPDL  60
EVDPTEIFTD FEAIANGGDG VTDQEVPTVQ PLADAVHLDP VDPCSGVLAE ENTTHALVEE  120
GKIECNHGEE VAAGNNGDFG GSRGTVLAEK SPSSTTSSSQ EAENRHKSSS KHSQGKKKAK  180
VDWTPELHRR FVQAVEQLGI DKAVPSRILE IMGIDSLTRH NIASHLQWDL LLTIKSKKRS  240
VCVNNLLCKL VQKYRSHRKH MLAREAEAAS WTQRRQMYAA RGAPAAVKRP DSNAWTVPTI  300
GFPPPPPPPP PHPMQHFSRP LHVWGHPTPA VESPRVPMWP RHLVPRAPTP PWAPPLSDPA  360
FWHHPYMRGP AHMPGQVAPC VAVPMPAARF PAPPVRGILP CPPPMYRPLV PPALTSKSQQ  420
DTQLQLQTQP SSESIDAAIG DVISKPWLPL PLGLKPPSVD SVMGELQRQG VADVPPACG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-14	175	227	2	54	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00022	PBM	Transfer from AT2G20570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022479.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812542.1	0.0	probable transcription factor GLK1
Swissprot	Q5Z5I4	1e-164	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	A0A1E5VSE8	0.0	A0A1E5VSE8_9POAL; Putative transcription factor GLK1
STRING	Pavir.Db01285.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-51	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]