PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022385.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 449aa    MW: 48219.5 Da    PI: 6.2062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022385.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H226.21.9e-086889223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C+ Cgk+Fs++s+L  H+r+H
  Do022385.1 68 VCQECGKVFSSWSSLFGHMRRH 89
                6********************9 PP
2zf-C2H212.90.00033253265113
                 EEETTTTEEESSH CS
     zf-C2H2   1 ykCpdCgksFsrk 13 
                 y+Cp Cgk+Fs+ 
  Do022385.1 253 YECPGCGKVFSSY 265
                 99********986 PP
3zf-C2H216.13.1e-05285307123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+Cp Cgk+Fs+   L  H  +H
  Do022385.1 285 YECPGCGKVFSSYQALGGHRASH 307
                 99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.5E-46789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8036794IPR007087Zinc finger, C2H2
SuperFamilySSF576673.65E-86889No hitNo description
PfamPF139122.9E-66989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-66989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-8248268No hitNo description
PfamPF139128.5E-6252269IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-5252307No hitNo description
PfamPF139121.2E-11284309IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-4284308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031285307IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616285312IPR007087Zinc finger, C2H2
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
SMARTSM00355210366385IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-5367385IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRSHLSLGEA AAAAEGDAVD ELVRASANGG RSSSGVVGYG LRENPRKTRR LSDFADEEED  60
GGDGEHKVCQ ECGKVFSSWS SLFGHMRRHA SGGRHRDDEE DVEEEFAPEE AEAEEAEMVV  120
AMEMEAPVLA RAAVTALAAA PRRRRRSMRV AAPPPAPPPV LCGFEKEPED VALCLLMLSR  180
DTGLWGSPVK EEPFESTKKQ AGLPRRDQAY NSDDDSVLLQ HADAKIKARV PKGRKLSSPK  240
QQRDAVAPKR TRYECPGCGK VFSSYQALGX PKQQRDAVAP KRTRYECPGC GKVFSSYQAL  300
GGHRASHKRI NTSCRAPKVT PAAAASPKPE PSTETYTSFS TMSPSASPDS VAIGFGKSKA  360
HAAEKFECPV VFSSGQALGG HKLSHFMPAD DGEVYAGGAD QDQEQHSAAA AGFLDLNFPP  420
APPEEVTRPI SYDDLSSHTV AELVQLADG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126153e-41CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361333e-41CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308538.11e-148zinc finger protein 865
TrEMBLA0A1E5WEM40.0A0A1E5WEM4_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.J10663.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-16C2H2-like zinc finger protein