PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do022031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 212aa MW: 22179.4 Da PI: 7.3707 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.6 | 9.9e-37 | 49 | 105 | 2 | 58 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++++l+cprC+stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r++ Do022031.1 49 PKQQLECPRCQSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRS 105 7899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.7E-33 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.838 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-20 | 53 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MAPAAAAASI LSATSAAASK RPAASDADHL DGSSVLHQGD DAARKGQQPK QQLECPRCQS 60 TNTKFCYYNN YSTAQPRHFC RACRRYWTHG GTLRDVPVGG ASRRSGSGAK RRRVSADPSS 120 SSASSPPQTA ARAEFDACLP DLSAFPFLSD GSFLPQFDLG VAPAAFSSWP SVVPDFYDGL 180 APWDDGTVGA TGVTGAWGDI AGLDLSWPPP GN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 109 | 113 | KRRRV |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do022031.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC582414 | 2e-89 | KC582414.1 Sorghum bicolor dof21 protein (dof21) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824347.1 | 9e-96 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A1E5VN13 | 1e-150 | A0A1E5VN13_9POAL; Uncharacterized protein | ||||
STRING | Si023256m | 3e-87 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66940.1 | 7e-27 | Dof family protein |