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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 653aa MW: 71997.5 Da PI: 6.3719 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 316.2 | 6.9e-97 | 277 | 648 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L++cAeavs +d + a lL +++ ++sp+gd mqRla+y++ +L+ar+a++++ely++l ++ ts ++ l+a++lf ++ ++ +++ N Do021853.1 277 HTMLIRCAEAVSCHDRRGAADLLLQIRGHSSPTGDGMQRLAHYLADGLEARMAGTGNELYQSLVAKGTS---TACILKAHQLFLGTCFFFPVQYPFSNT 372 578***************************************************************999...8999*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I +a++g +++Hi+ +++++GlQWp Ll+ L++R++gpp++R+Tgv++p +g ++ +eetg+rL+ A+++gvpf+f+ +a + ++++ e+L+++ Do021853.1 373 TIRNAAAGRKKLHIVHYGLGHGLQWPDLLRCLSCREGGPPEVRLTGVDNPLPGfhPARLIEETGRRLSACARQFGVPFKFRG-IAAKSDAVHAEDLNID 470 **************************************************999999999***********************.6999************ PP GRAS 198 pgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +E+l+Vn+ ++ +l+desv ++ +rd vL+++k+++Pkv+++ + +h ++ F+ rf +al++y+alfd++++ ++r+++ r vE+ +++r + Do021853.1 471 ADEVLVVNCFYHFRTLMDESVVVDRpnPRDLVLRTIKKMRPKVFIHGVFNGSHCAAYFMSRFRDALHHYTALFDMMDTIVARDNDMRLQVEQGIFARCA 569 ********************98776669*********************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vnv+acega+r+er ++++kW++r ++aG++ +pl+ +++ + +++ + + + ++e++g+l+ gWk+r L+++S W+ Do021853.1 570 VNVIACEGADRVERSQSYKKWEARSQRAGLRLLPLDPEIVRMLTAKVKESH-KYFVINEDHGWLLHGWKGRMLYALSTWT 648 ******************************************999999999.55*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50974 | 9.442 | 1 | 57 | IPR004223 | Vitamin B12-dependent methionine synthase, activation domain |
PROSITE profile | PS50985 | 55.803 | 250 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-94 | 277 | 648 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009086 | Biological Process | methionine biosynthetic process | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008705 | Molecular Function | methionine synthase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MSPASSPSAF LDLPPTPHVY GSSSKDDDLV LPYIARMLME EEEEEDMLVD RLSYYQHADH 60 HQALLRAQQP FAHILSGASS DAGLGAWPYG STVELSPLVS AAPGPCYSDD IDTLAATVLS 120 QGNNVDTTLS FSLNAPSTDT VEPPSSFLPA ESSCMDDLAT TAFFKGMEEG SKFLPTDSKR 180 ADGTGRRKRL EGASEVEVEA AMRRSSKQMA APQPESEEES AAREMMDKLM LTGYDACLAD 240 TNNTQDSRGA MDTAKTPPPP KGRSGSASPA RHAVDLHTML IRCAEAVSCH DRRGAADLLL 300 QIRGHSSPTG DGMQRLAHYL ADGLEARMAG TGNELYQSLV AKGTSTACIL KAHQLFLGTC 360 FFFPVQYPFS NTTIRNAAAG RKKLHIVHYG LGHGLQWPDL LRCLSCREGG PPEVRLTGVD 420 NPLPGFHPAR LIEETGRRLS ACARQFGVPF KFRGIAAKSD AVHAEDLNID ADEVLVVNCF 480 YHFRTLMDES VVVDRPNPRD LVLRTIKKMR PKVFIHGVFN GSHCAAYFMS RFRDALHHYT 540 ALFDMMDTIV ARDNDMRLQV EQGIFARCAV NVIACEGADR VERSQSYKKW EARSQRAGLR 600 LLPLDPEIVR MLTAKVKESH KYFVINEDHG WLLHGWKGRM LYALSTWTSD DDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-42 | 282 | 648 | 25 | 379 | Protein SCARECROW |
5b3h_A | 2e-42 | 282 | 648 | 24 | 378 | Protein SCARECROW |
5b3h_D | 2e-42 | 282 | 648 | 24 | 378 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021853.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317867.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-129 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1E5V302 | 0.0 | A0A1E5V302_9POAL; Scarecrow-like protein 9 | ||||
STRING | Sb05g027820.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-131 | GRAS family protein |