PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021600.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 192aa    MW: 19478 Da    PI: 10.5521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021600.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20111162256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrdp+  g  +r +lg+fgtaeeAa+a+++a+ +++g+
  Do021600.1 111 HYRGVRRRP-WGKYAAEIRDPKRHG--ARLWLGTFGTAEEAAAAYDRAAFRMRGA 162
                 7********.**********95443..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-31110169IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-23111170IPR016177DNA-binding domain
PROSITE profilePS5103224.118111169IPR001471AP2/ERF domain
SMARTSM003801.2E-35111175IPR001471AP2/ERF domain
CDDcd000182.75E-16111171No hitNo description
PfamPF008471.2E-14111161IPR001471AP2/ERF domain
PRINTSPR003671.1E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDTSLSLAGA AAAAHGLGQY LPLNENDSLD MVLFNVLREA SGGSAASAAT TYPPLPASSL  60
PPPLMALASG GGVGVGVGCN NRTAAHAPKA AAGTGRRDGG HGAWAAGTGR HYRGVRRRPW  120
GKYAAEIRDP KRHGARLWLG TFGTAEEAAA AYDRAAFRMR GAKALLNFPP VVASCGVTTA  180
TAKQAAGVTE AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-31108174268ATERF1
3gcc_A5e-31108174268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276813e-88KJ727681.1 Zea mays clone pUT5609 AP2-EREBP transcription factor (EREB134) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969969.12e-65ethylene-responsive transcription factor 13-like
TrEMBLA0A1E5VWT01e-133A0A1E5VWT0_9POAL; Uncharacterized protein
STRINGPavir.Ea03031.1.p3e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-19ethylene-responsive element binding factor 13