PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021554.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 517aa    MW: 58021.3 Da    PI: 9.8778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021554.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-115763099
                ..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                ++e++ ltl+   ++++W  k+ +rk ++ y+l++ W +Fv++n+++egD++++  ++  ++f l+v ++r+
  Do021554.1  5 PHENTSLTLQRpGKSKKWHPKFYIRKDRRVYMLRGQWLHFVRDNHVQEGDICLLVPTKPgRKFVLTVYLLRA 76
                456778999995566*******77999989************************988777888888887775 PP
2B341.72e-132282992198
                 HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +f++++ gk   s+t++le+++g  ++v++    + +++vl+ GW+ Fv+a++++e+D+++F+ +++s f   v +f+
  Do021554.1 228 RFLKHFAGK--LSRTIKLESPNGSLYDVEV--MEHYNKMVLRHGWEAFVDAHHIEENDSLLFRNIENSVF--EVLIFD 299
                 677666666..789****************..999999*************************8888888..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.828177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-10275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-12376IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-12472No hitNo description
PfamPF023624.5E-10676IPR003340B3 DNA binding domain
SMARTSM010190.0015210301IPR003340B3 DNA binding domain
PfamPF023622.2E-11227299IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729228301IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-17228303IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-16228303IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-15231299No hitNo description
Gene3DG3DSA:2.40.330.102.3E-4418514IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
LAHIPHENTS LTLQRPGKSK KWHPKFYIRK DRRVYMLRGQ WLHFVRDNHV QEGDICLLVP  60
TKPGRKFVLT VYLLRATETS SSGGSETGFQ RVSPCHGRSG TKMDSAGEHV STESSVREIS  120
DGSLNTNDSG GPSDPPYILS FMSHLSRSQR KIIGEKVQAI QSKVTIYIVI MKRTSVVASK  180
QMLVLLLHGH LPVPAHAAAG AAGDLPELGL LAALPEDEGK KKKRRRGRFL KHFAGKLSRT  240
IKLESPNGSL YDVEVMEHYN KMVLRHGWEA FVDAHHIEEN DSLLFRNIEN SVFEVLIFDS  300
DGCEKMFRCS GIKNTPSFGE RSLYSVDISS NSQHDTTESS GSERVARCVK GRSSRHGKTS  360
KMPVTSSSSG GSGEDIPSEN EYFELDDLHK PPGADYVISC RSHLSPEQKE RVITLIQEIQ  420
PEITVYVTVM RKSHVHTPAR SVVSSLLLNS KSLLPALILL LYLILYMLPY VITKEYASAH  480
FPHGNANVTL QRPGKSKKWH PEFYKRKDRS IYMLRGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224KKKKRR
2219225KKKKRRR
3220225KKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5V0S20.0A0A1E5V0S2_9POAL; B3 domain-containing protein (Fragment)
STRINGSi039499m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-11B3 family protein