PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do021464.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YB

Protein Properties

Length: 118aa MW: 13125.9 Da PI: 4.4961

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do021464.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	62	1.3e-19	2	63	36	97
NF-YB 36 qecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++cv+ef + v c+r++r+ti+gddl+ + +lGf+dyv pl+ yl++yre eg++ Do021464.1 2 DQCVAEFSTVVMRAPKVECRRDRRQTITGDDLIVGMRSLGFDDYVGPLTEYLRRYRESEGQR 63 78*********99******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-16	1	69	IPR009072	Histone-fold
SuperFamily	SSF47113	7.33E-13	3	71	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MDQCVAEFST VVMRAPKVEC RRDRRQTITG DDLIVGMRSL GFDDYVGPLT EYLRRYRESE 60 GQRRSRRSAM PPPAPALVAP TTEAEALPLP PGLTLQLVPP SLRDVTEMPP ADVGDDEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do021464.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813092.1	8e-33	nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A1E5VZ37	1e-77	A0A1E5VZ37_9POAL; Uncharacterized protein
STRING	Si007865m	8e-32	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	8e-14	nuclear factor Y, subunit B10