PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do021387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 88aa MW: 9836.13 Da PI: 7.5241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.3e-08 | 12 | 53 | 14 | 54 |
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+i + +++L++llP++s ++ +++ s + L+++++YI+sL Do021387.1 12 DEISELISKLQSLLPESSrRGAAGRSSASKLLQETCRYIRSL 53 6899************555*********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.912 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 12 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.82E-8 | 12 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 12 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSGHRAGRIT DDEISELISK LQSLLPESSR RGAAGRSSAS KLLQETCRYI RSLHREVDDL 60 NNRLSELMAT MDGDSPQADV IRNLLRLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do021387.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983139.1 | 2e-50 | transcription factor ILI3 | ||||
Swissprot | A2XD15 | 3e-30 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 3e-30 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | A0A1E5WJJ0 | 4e-55 | A0A1E5WJJ0_9POAL; Transcription factor ILI3 | ||||
STRING | Si038834m | 1e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 6e-25 | bHLH family protein |