 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do021379.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
WRKY |
| Protein Properties |
Length: 222aa MW: 24102 Da PI: 9.4164 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do021379.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 35 | 2.9e-11 | 124 | 146 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS
WRKY 1 ldDgynWrKYGqKevkgsefprs 23
ldDgy+WrKYG+K vk+s++prs
Do021379.1 124 LDDGYRWRKYGKKLVKNSPNPRS 146
59********************9 PP
|
| 2 | WRKY | 51.5 | 2e-16 | 160 | 200 | 19 | 59 |
SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+ r+YYrC+ +gC+vkk+ver+++d ++v++tY g Hnh+
Do021379.1 160 HACRNYYRCSNEGCQVKKRVERARDDARFVITTYDGVHNHP 200
568*************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MSSSSLSPAD WIGGGEFVGI GVGEELYLPS EAAFHVEQQA PAPPLFDTLQ ADYRASGGAG 60
SSSEGEPGKQ SQTEASALSS SEGLAIHDNG CFTCAAAGAR SLPLPARKDG SKIAFKTRSD 120
VDVLDDGYRW RKYGKKLVKN SPNPRSRRRL AACLTLRRMH ACRNYYRCSN EGCQVKKRVE 180
RARDDARFVI TTYDGVHNHP AAPPARPLRG YRLADPPQGH RV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003341 | 5e-44 | AP003341.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06. |
| GenBank | AP003492 | 5e-44 | AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02. |
| GenBank | AP014957 | 5e-44 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012609 | 5e-44 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
