PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021314.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 346aa    MW: 36277.1 Da    PI: 8.8787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021314.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-065880123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  Do021314.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-65780No hitNo description
Gene3DG3DSA:3.30.160.601.0E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
PfamPF121715.1E-55880IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035521099129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.33E-6129156No hitNo description
SMARTSM00355160134156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEVEATPTTA VSSSGGGSAA LPPPGPPAKK KRALPGMPDP DAEVIALSPK TLMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEARKRVYV CPEPSCVHHD PARALGDLTG  120
IKKHFCRKHG EKKWKCDKCS KKYAVHSDLR DSFITHRAFC DALAEESAKA RAEAPPAELP  180
SSSAAVGPPS ALPHPQAPPA EPAPLRQQPP PPPPAAAPAP HHVEQRNERE TNPPDPVRFA  240
TPAPAPQVPL PVLSQTSLTS ANVSASSSSS SSVAGTSQSL IGGMFAPSSM APAPQFPDLG  300
GGLGRPERAL PAKPPSLCLA TDASQCNSLI GIAAAAGDDE HSGSLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545020.0BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBankBT0546180.0BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBankEU9555780.0EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798188.11e-143protein indeterminate-domain 2-like isoform X1
TrEMBLA0A2S3ITA11e-142A0A2S3ITA1_9POAL; Uncharacterized protein
STRINGSi035083m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-73indeterminate(ID)-domain 2