PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020887.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 306aa    MW: 34781.3 Da    PI: 7.9701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020887.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15391341100
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffk+l     + +  l+lp kf++e g    ++ +l+l   e    W+v++  + k+g ++l++GW +F++a++L++g  + F++d+   + l+v+vf+
  Do020887.1  39 FFKIL--LPGMYEEALRLPAKFVKELGAH--RDLKLRLAGgEMMPLWDVEVFTDEKRGDMYLARGWTKFARAHDLRDGYLLFFHYDD-GAAALTVTVFD 132
                 78888..444555569********99866..666788777555599*****99********************************87.77779*****9 PP

                 SS CS
          B3  99 ks 100
                 +s
  Do020887.1 133 RS 134
                 85 PP
2B342.31.3e-132012761290
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                  ++   +p +f ++hg+  ++ ++l+     grsW+v+l  ++++++    + ++ GW +F+ +ngL++gD + Fk++++ s+f
  Do020887.1 201 VQN---VPVEFQDAHGYARRRRVELR---MGGRSWSVNL--KRGKRAlgdrTAFKYGWHQFCVDNGLEVGDACFFKVIREgSCF 276
                 443...79999999998877765555...478*******..4444444556*************************99876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.07E-1837132No hitNo description
SuperFamilySSF1019361.79E-1637136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.39337134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-1538136IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1239133IPR003340B3 DNA binding domain
SMARTSM010195.1E-1339134IPR003340B3 DNA binding domain
CDDcd100173.68E-13191276No hitNo description
SMARTSM010190.0043191279IPR003340B3 DNA binding domain
PfamPF023626.5E-11198276IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-14198273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19202278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.11204301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPGGVGRPRR GSVKERTAAA NRHGMAEEMA GLSLSDFEFF KILLPGMYEE ALRLPAKFVK  60
ELGAHRDLKL RLAGGEMMPL WDVEVFTDEK RGDMYLARGW TKFARAHDLR DGYLLFFHYD  120
DGAAALTVTV FDRSTCRKQW RKGRPSLSGH RRAVALHREP EAVQPGNEAE PVPGESPRPS  180
PSHACSPRSQ PTHSLTSHVL VQNVPVEFQD AHGYARRRRV ELRMGGRSWS VNLKRGKRAL  240
GDRTAFKYGW HQFCVDNGLE VGDACFFKVI REGSCFDDDE EWEDEWDDDE HVLKVEVRKK  300
DGTMLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985224.11e-134B3 domain-containing protein Os03g0212300
TrEMBLA0A1E5W8P60.0A0A1E5W8P6_9POAL; B3 domain-containing protein
STRINGSi036918m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-16B3 family protein