 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do020747.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 484aa MW: 51669 Da PI: 9.1322 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do020747.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.5 | 2.6e-19 | 94 | 148 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k
Do020747.1 94 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTK 148
778899***********************************************98 PP
|
| 2 | Homeobox | 59.9 | 4.1e-19 | 313 | 367 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k
Do020747.1 313 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 367
678899***********************************************98 PP
|
| 3 | HD-ZIP_I/II | 121.9 | 3.2e-39 | 94 | 176 | 1 | 83 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL ke
Do020747.1 94 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALASSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLGKE 176
69******************************************************************************987 PP
|
| 4 | HD-ZIP_I/II | 123.7 | 8.8e-40 | 313 | 403 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk
Do020747.1 313 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 403
69*************************************************************************************9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MAPQSLDLGL SLGLGLAALQ PSFCYSGNAA TVVAAAAERE ASPTAAEERE RERRCSPAGS 60
PLSSGSGSGK RAAAERSAGA GSGSGDEDDD GGARKKLRLS KDQAAVLEEC FKTHHTLTPK 120
QKVALASSLG LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RWCEQLAEEN RRLGKEPIEC 180
SFLVSTKTMM PSSLDLGLSL GLTSQGSLSS CTTAGSSGGA ISPWAAAISS VVGDVMMRRD 240
AHAQQQQQHG AAAAAAFDAD HGAMRASTSP DSAAALSSGA SGDNKRDHRE LERSGSGGVR 300
SDEEDGADGS GGRKKLRLSK DQAAVLEECF KTHSTLNPKQ KVALANRLGL RPRQVEVWFQ 360
NRRARTKLKQ TEVDCEYLKR WCERLADENK RLEKELADLR ALKAAPSPAA QPASPAATLT 420
MCPSCRRVAT NHQQQCHPKS KAPAAAAAGN VVPSHCQFFP AAVDRKNQST WNAAAAPLVT 480
RELF
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 361 | 369 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968120 | 0.0 | EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. |
