PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020669.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 324aa    MW: 34570.3 Da    PI: 10.2378
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020669.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011117139123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F     L  H+r+H
  Do020669.1 117 HECHICGLGFEMGQALGGHMRRH 139
                 79********************9 PP
2zf-C2H211.20.0012283305123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg  F     L  H+r+H
  Do020669.1 283 HQCHVCGLGFEMGQALGGHMRRH 305
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-55080No hitNo description
SMARTSM003550.295476IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-95478IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1385481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-8116139No hitNo description
SMARTSM003550.49117139IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-10117142IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-8223250No hitNo description
SMARTSM003550.96228250IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-9228252IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576674.9E-5282309No hitNo description
PROSITE profilePS501579.764283310IPR007087Zinc finger, C2H2
SMARTSM003550.31283305IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-9283308IPR007087Zinc finger, C2H2
PROSITE patternPS000280285305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKHHREQQEE VVSLALSLST TDSGTTSDST TASPAAKRAR RRGPVVATSG EGEFVCKTCN  60
RAFTSFQALG GHRTSHLRGR HGLDLGVVGA KALRQHKQAD VKGADKQQEG NRPQQQHECH  120
ICGLGFEMGQ ALGGHMRRHR EEMGAAEAAD AWVWRSVSRL PEELELRRAA AAEPPVLDRP  180
LPIPVSFMTK HPRDAGDVTL SLSLALGGLP DHGGIKKPRR AVSGEGEFVC KTCSRAFASF  240
QALGGHRTSH LRGRHGLALG MPTAAPAKAA AKDAKPAAAP ASHQCHVCGL GFEMGQALGG  300
HMRRHREEAA AVAQAPPVLL QLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981259.13e-74zinc finger protein ZAT12
TrEMBLA0A1E5V1M30.0A0A1E5V1M3_9POAL; Uncharacterized protein
STRINGOPUNC03G36150.11e-100(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-18C2H2 family protein