 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do020646.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
NAC |
| Protein Properties |
Length: 372aa MW: 40214.5 Da PI: 6.9573 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do020646.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.9 | 1.2e-50 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98
lppGfrFhPtdeel+v+yL +++++ ++++ +i++vdiyk++PwdLp+k+ ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ +ge
Do020646.1 16 LPPGFRFHPTDEELIVHYLMNQAASIPCPV-PIIADVDIYKFDPWDLPSKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHDSaTGE 113
79****************************.88***************77777899*************************************987888 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128
vg+kk Lvfykgr p+g+kt+W+mheyrl
Do020646.1 114 GVGVKKALVFYKGRPPRGTKTNWIMHEYRL 143
9***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 372 aa
Download sequence Send
to blast |
MEIEMMSAAQ SATSQLPPGF RFHPTDEELI VHYLMNQAAS IPCPVPIIAD VDIYKFDPWD 60
LPSKALYGDG EYYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHDSA TGEGVGVKKA 120
LVFYKGRPPR GTKTNWIMHE YRLAAANPLA TAAAYRPPSK FRNVSMRLDD WVLCRIYKKS 180
GQASPMVPPL ADYEHLDHDE PSTGGFDDIC SFYAPTSSSG ASTTASSAIM QQQPATALLP 240
GLPKIPSISE LFDEYALAQI FDTAVPAEQD PLAVHPSLNQ LLAVGDNAHY SDMTIYSPSP 300
AAGGKRKAMA MSRDVCAGGA GMITAAGHHH HHPPPAKRLN GSCFDAPHQP ATGLPATSSV 360
LGGLNHHMLP QF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-72 | 16 | 184 | 20 | 173 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT067914 | 0.0 | BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds. |
| GenBank | EU971399 | 0.0 | EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds. |
| GenBank | KP297932 | 0.0 | KP297932.1 Zea mays Zma1158 mRNA, complete cds. |
