 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do020576.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
Whirly |
| Protein Properties |
Length: 268aa MW: 29710.9 Da PI: 9.76 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do020576.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 198.7 | 7.7e-62 | 93 | 231 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99
s+yk+kaal+ +++ p+f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+lkveP
Do020576.1 93 SIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKVEPT 191
7************************************************************************************************** PP
Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
pdG G f+nlsv+n l++++es+++P++k+efav+ s ++
Do020576.1 192 PDGNGRFFNLSVQNRLLNVDESIYIPITKGEFAVIVSTFN 231
***********************************99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MPPPAPLFLS LPSPPPPPLL PVHHHPKAPQ ALSLAPPLAS SRRLALPACP VASSRHSDYF 60
DPRAPPPPPP RGDGGYGRPP NGAHEGRVFT SYSIYKGKAA LSFDPRPPQF VPLDSGAYKV 120
AKEGFVLLQF APAVATRQYD WTRKQVFSLS VWEIGTLLTL GPTDSCEFFH DPFKGRSEEG 180
KVRKVLKVEP TPDGNGRFFN LSVQNRLLNV DESIYIPITK GEFAVIVSTF NYIIPHLMGW 240
STFTSSIKPE ESRAYSRPQS APEYEWRR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 1e-89 | 55 | 267 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 1e-89 | 55 | 267 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 1e-89 | 55 | 267 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 1e-89 | 55 | 267 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 4koq_A | 8e-90 | 87 | 248 | 8 | 169 | Single-stranded DNA-binding protein WHY3, chloroplastic |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT043360 | 0.0 | BT043360.1 Zea mays full-length cDNA clone ZM_BFc0169P08 mRNA, complete cds. |
| GenBank | EU595664 | 0.0 | EU595664.1 Zea mays Whirly family nucleic acid binding protein (WHY1) mRNA, complete cds. |
| GenBank | JX469972 | 0.0 | JX469972.1 Zea mays subsp. mays clone UT3235 WHIRLY-type transcription factor mRNA, partial cds. |
