PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020560.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 364aa    MW: 38053.7 Da    PI: 7.3525
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020560.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-32169222255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Do020560.1 169 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 222
                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-29166223IPR009057Homeodomain-like
SuperFamilySSF466899.5E-16167223IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-24169222IPR006447Myb domain, plants
PfamPF002496.1E-7170221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTTA TPHDHHHHAA AALSARFFAA AGGGGNGVGN PAAMAPSLQL  60
PMPVPLPLPV QLPMTPSAAA AAAAGAAGLY YHPDAAAAAV LRPIRGVPLY QHPHTHAVPP  120
TFPPHAAAAA GPCFCEPCHV AAGAWRRAGC GAGARVAGFP PAKRAARAPR MRWTSTLHAR  180
FVHAVELLGG HDRATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTERPA ASSDQADGFE  240
NGSAGEICDD NSLDLHGYGG GGRPESAAAA RHGRLAACND HGSSTGAHGA LWNSSSRCIY  300
TWEDWTGFPS ESNTGSLHSL KEQMPSKSLE ILSDMNSCVS ETTTSSTSDL NLEFTLGRPQ  360
NRPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16170224357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16170224357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16170224357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16170224357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570080.0EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821359.10.0probable transcription factor RL9 isoform X1
TrEMBLA0A1E5W2690.0A0A1E5W269_9POAL; Putative transcription factor KAN2
STRINGGRMZM2G123308_P021e-167(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-36G2-like family protein