PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020524.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 868aa    MW: 95955.5 Da    PI: 8.3788
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020524.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22183284199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++++++  +++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  Do020524.1 183 FCKALTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--EIQAKDLHDSVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKRQL 277
                 99*****************************96555544..8************************************************..5689999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Do020524.1 278 LLGIRRA 284
                 ****997 PP
2Auxin_resp118.84.4e-39309392183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Do020524.1 309 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 392
                 79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-41172312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-41175298IPR015300DNA-binding pseudobarrel domain
CDDcd100177.30E-19182283No hitNo description
SMARTSM010197.9E-22183285IPR003340B3 DNA binding domain
PfamPF023621.8E-20183284IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829183285IPR003340B3 DNA binding domain
PfamPF065077.7E-34309392IPR010525Auxin response factor
PROSITE profilePS5174524.846735819IPR000270PB1 domain
PfamPF023099.7E-9746820IPR033389AUX/IAA domain
SuperFamilySSF542772.75E-7748814No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MVFFNALILG SSHGGRRLAA CCKTPNGGGM GRMRLGLGPR VFGGIRGEKV ALFLRLLMLP  60
LVWLAVCSGE KKPPPINSEL WHACAGPLVS LPPAGSLVVY FPQGHSEQVA ASMQKDVDGH  120
VPSYPNLPSK LICLLHNVTL HADPETDEVY AQMTLQPVTS YGKEALQLSE LALKQPRPQT  180
DFFCKALTAS DTSTHGGFSV PRRAAEKIFP PLDFTMQPPA QEIQAKDLHD SVWTFRHIYR  240
GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDEKRQLLLG IRRANRQPTN ISSSVLSSDS  300
MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVVPFAKYQ KALYGNQISL GMRFRMMFET  360
EELGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW EIEPVAAPFF  420
MCPPPFFGSK RPRQIDDESS EMENLLKRAM PWLGEEICIK DPQTQNTIMP GLSLVQWMNM  480
NMQQNSSFAN TAMQSEYLRS LSNPNMQNLG AADLSRQLCL QNQILQQNSI QFSSPKLPQQ  540
MQPVNELSKA TLPLNQLGQK LILDMQQQLS NSQSLSQQQM MPQQSTKVPS QSTTPPPPPM  600
QQGPQQKVPQ KHVGFTDTSH AAIPPTTSVN TISAAGSPLM ANGATHSVLT EEIPSCSTSP  660
STANGNHLLQ PILVRNQQCG MINNEKVPQS TAPMSIPSSL EAVTATPRST KELPKLNSNV  720
KQSVMASKLP NAGPVPQNLV YKRGAVGRSI DISQYNGYDE LKHALARMFS IEGQLEERQR  780
IGWKLVYKDH EDDILLLGDD PWEEFVNCVR CIRILSPHEV QQMSLDGDLG NNILPNQACS  840
SSDGGNAWRA RCDQNSGNPS TGSYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1666841344388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966097.10.0auxin response factor 19 isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A1E5W8710.0A0A1E5W871_9POAL; Auxin response factor
STRINGOPUNC06G24250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]