PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21525.6 Da PI: 7.8009 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.2 | 7.8e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +lal+k+ Do020481.1 13 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQMQLALAKA 111 7***********************************************************************************************998 PP DUF260 100 e 100 e Do020481.1 112 E 112 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.851 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-44 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:3.40.50.1820 | 5.9E-4 | 37 | 144 | IPR029058 | Alpha/Beta hydrolase fold |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAGSGSSSGS SSPCASCKLL RRRCTQECVF APYFPPEDPH KFAIVHKVFG ASNVSKMLQE 60 LPAQQRADAV SSLVYEANAR MRDPVYGCVG AISYLQQQVS QLQMQLALAK AEILCVQIQH 120 DGHAIASPPS ASQQIQRQQQ HQMDAEAYGS LLMQNTLMNT LNSTAVHHQQ QMLGSLGSSG 180 NTAMMLQEAC LKKESLWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-50 | 6 | 114 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-50 | 6 | 114 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020481.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100852 | 1e-102 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661028.1 | 1e-107 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-68 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1E5V2X7 | 1e-144 | A0A1E5V2X7_9POAL; LOB domain-containing protein 12 | ||||
STRING | Si026864m | 1e-106 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-58 | LBD family protein |
Publications ? help Back to Top | |||
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