PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do020438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 812aa MW: 88864.5 Da PI: 6.3326 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ Do020438.1 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 41.8 | 2.8e-14 | 165 | 260 | 2 | 96 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 +aee+ +e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ e+l d++ W +++++ e+ g g+++l ++ Do020438.1 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYM 260 789999****************************************************7777777777.********99999888888866665554 PP | |||||||
3 | START | 60 | 7.4e-20 | 262 | 345 | 125 | 205 |
EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s+++ ++k+++ +l+++++ Do020438.1 262 VCERSLSGSGGGPNaasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLRQ 345 56677776666666666889*******************************************************999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 8 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 26 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.19E-15 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 6.0E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.61E-6 | 79 | 118 | No hit | No description |
SuperFamily | SSF55961 | 7.83E-23 | 164 | 348 | No hit | No description |
SMART | SM00234 | 9.2E-11 | 164 | 346 | IPR002913 | START domain |
Pfam | PF01852 | 4.0E-11 | 165 | 260 | IPR002913 | START domain |
Pfam | PF01852 | 2.9E-17 | 262 | 345 | IPR002913 | START domain |
PROSITE profile | PS50848 | 12.082 | 262 | 355 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.4E-5 | 274 | 320 | IPR023393 | START-like domain |
Pfam | PF08670 | 2.0E-50 | 669 | 811 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDASNPS GLLSIAEETF TEFLSKATGT 180 AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS 240 LEVFTMFPAG NGGTIELVYM QVCERSLSGS GGGPNAASAQ QFVRAEMLPS GYLVRPCEGG 300 GSIVHIVDHL DLEAWSVPEV LRPLYESSRV VAQKMTTVAL RHLRQIAQET SGEVVYALGR 360 QPAVLRTFSQ RLSRGFNDAI SGFNDDGWSL IGGDGIEDVV VACNSTKKIR NNGNAGITFG 420 APGGIICAKA SMLLQSVPPA VLVRFLREHR SEWADYNIDA YLASSLKASA CSLPGLRPMR 480 FSGGQMIMPL AHTVENEEIL EVVRLEGQSL THDEALLSRD IHLLQLCTGI DEKSVGSSFQ 540 LVFAPIDEHF PDDAPLISSG FRVIPLDMKT DGVSSGRTLD LASSLDVGSA APQASGDASP 600 ESCNLRSVLT IAFQFPYEMH LQDSVATMAR QYVRSVVSAV QRVSMAISPS QSGLNAGQRM 660 LSGFPEAATL ARWVCQSYHY HLGVELLNQS DEAGEALLKM LWHHPDAILC CSFKEKPMFT 720 FANKAGLDML ETSLVALQDL TLDKIFDESG RKALFSDISK LMEQGYVYLP SGVCMSGMGR 780 HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do020438.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041685 | 0.0 | BT041685.2 Zea mays full-length cDNA clone ZM_BFb0031E09 mRNA, complete cds. | |||
GenBank | DQ286526 | 0.0 | DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468669.1 | 0.0 | homeobox-leucine zipper protein HOX10 isoform X2 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A1E5V2R5 | 0.0 | A0A1E5V2R5_9POAL; Homeobox-leucine zipper protein HOX10 | ||||
STRING | Sb01g050000.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |