PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YB

Protein Properties

Length: 627aa MW: 66878 Da PI: 6.276

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020031.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	78	1.3e-24	10	81	24	95
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 n ki+ dake v +cv+ef + v + a++ c+++kr t++gddl+ a+++lGf+dyv l+ yl++yre eg Do020031.1 10 NYKITGDAKEAVYKCVAEFAAVVIGAAAQECRQDKRLTVTGDDLILAMSNLGFDDYVGLLTEYLRRYRESEG 81 67*******************************************************************998 PP
2	NF-YB	104.9	5.4e-33	190	280	5	95
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 + +P a v+r+m+ + P n+ki dake v+ec +ef++ v a++ c+r+kr t++gddll a+++lGf+dy+ pl++yl++yre eg Do020031.1 190 EYSIPGATVARVMRLATPPNSKINSDAKEAVDECLAEFMAVVNRAAAEECKRDKRTTVTGDDLLLAMSNLGFDDYIRPLTLYLRRYRESEG 280 567999**********************************************************************************997 PP
3	NF-YB	152.1	1e-47	402	496	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr+lP+anvsrim+++lP +akis+dake++q+cvsefisf+t+ea+++c++e+rkt++++d++wa+ +lGf+dyv pl+++l++ re eg Do020031.1 402 VREQDRLLPVANVSRIMRRALPPHAKISDDAKEVIQDCVSEFISFITGEANERCHNEHRKTVTAEDIVWAMNHLGFDDYVGPLNAFLQRMRESEG 496 59******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.38E-18	6	81	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.3E-21	8	87	IPR009072	Histone-fold
Pfam	PF00808	7.1E-9	9	57	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.2E-30	185	290	IPR009072	Histone-fold
SuperFamily	SSF47113	8.85E-25	189	288	IPR009072	Histone-fold
Pfam	PF00808	6.3E-15	192	256	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-44	401	499	IPR009072	Histone-fold
SuperFamily	SSF47113	5.43E-35	405	506	IPR009072	Histone-fold
Pfam	PF00808	1.5E-24	408	472	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.3E-12	436	454	No hit	No description
PROSITE pattern	PS00685	0	439	455	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.3E-12	455	473	No hit	No description
PRINTS	PR00615	4.3E-12	474	492	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MRMATPPKPN YKITGDAKEA VYKCVAEFAA VVIGAAAQEC RQDKRLTVTG DDLILAMSNL 60 GFDDYVGLLT EYLRRYRESE GTMPRARHST MMPLAARAPV APAGVEAEAQ PLSPGLTLQL 120 GTPSVRDVTE LGVHADVYAV RRGGGAAPAG TSLAPPAADD DEAGAPNRAM DGTQAKNHQD 180 GAGGSQASEE YSIPGATVAR VMRLATPPNS KINSDAKEAV DECLAEFMAV VNRAAAEECK 240 RDKRTTVTGD DLLLAMSNLG FDDYIRPLTL YLRRYRESEG MPRTRHSTMS LEPAPAPTVE 300 AEAQPPLSPD LTLQLRPPLV RDVTELALHT DVYAVWRGAG AAQAGTSLAP PAAETLHHHT 360 MSMDHQGPKA GASCTLQTEP AAVAKEATAT EPPPMPSIEP VVREQDRLLP VANVSRIMRR 420 ALPPHAKISD DAKEVIQDCV SEFISFITGE ANERCHNEHR KTVTAEDIVW AMNHLGFDDY 480 VGPLNAFLQR MRESEGGGAG HGSGRGSRRG SPLQPGALDS SAQMRPAPYR HPQPAAPQAY 540 AAQRPVPSPV QASSAAPPHF GGWYQMSSGL YQMPGGQHPM VPSYYGRAAF QAGRSNGGFY 600 ADEASSSSEA GSSSEAPPAP RAGPRRY

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MRMATPPKPN YKITGDAKEA VYKCVAEFAA VVIGAAAQEC RQDKRLTVTG DDLILAMSNL  60
GFDDYVGLLT EYLRRYRESE GTMPRARHST MMPLAARAPV APAGVEAEAQ PLSPGLTLQL  120
GTPSVRDVTE LGVHADVYAV RRGGGAAPAG TSLAPPAADD DEAGAPNRAM DGTQAKNHQD  180
GAGGSQASEE YSIPGATVAR VMRLATPPNS KINSDAKEAV DECLAEFMAV VNRAAAEECK  240
RDKRTTVTGD DLLLAMSNLG FDDYIRPLTL YLRRYRESEG MPRTRHSTMS LEPAPAPTVE  300
AEAQPPLSPD LTLQLRPPLV RDVTELALHT DVYAVWRGAG AAQAGTSLAP PAAETLHHHT  360
MSMDHQGPKA GASCTLQTEP AAVAKEATAT EPPPMPSIEP VVREQDRLLP VANVSRIMRR  420
ALPPHAKISD DAKEVIQDCV SEFISFITGE ANERCHNEHR KTVTAEDIVW AMNHLGFDDY  480
VGPLNAFLQR MRESEGGGAG HGSGRGSRRG SPLQPGALDS SAQMRPAPYR HPQPAAPQAY  540
AAQRPVPSPV QASSAAPPHF GGWYQMSSGL YQMPGGQHPM VPSYYGRAAF QAGRSNGGFY  600
ADEASSSSEA GSSSEAPPAP RAGPRRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-43	1	493	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020031.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060974	2e-95	BT060974.1 Zea mays full-length cDNA clone ZM_BFb0079C17 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966908.1	9e-96	nuclear transcription factor Y subunit B-10
TrEMBL	K3Y2D4	1e-104	K3Y2D4_SETIT; Uncharacterized protein
STRING	Si008357m	1e-105	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-43	nuclear factor Y, subunit B6