PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do020013.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 505aa MW: 54704.2 Da PI: 6.6036

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020013.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	293.5	5.5e-90	27	474	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L ecA +++g++e+a + L++ l + +g p+ Rla ++ +La+rl r +v+ ++ al +++ n + aa++ f+e+sP++k + + N Do020013.1 27 RALCECAADIEAGSTEKAARRLSQATGLTAATGdGPLPRLAVLVADGLARRLIRpMVPAVAGALIDPSDH-LNRCCVRAARRSFFELSPFPKAAVAVVN 124 689***********************8888857***************7888888777444443.455666689999************ PP GRAS 100 qaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194 + Ilea+e+e+ vH+iDf + q+ QW+ Ll+ + sRpeg+p+lR+T v++ +ke l ++ e L++ A+ l+vpf+ + va ++e+l++++L Do020013.1 125 RVILEAMENEKNVHVIDFAgpAAQPCQWIQLLRDFHSRPEGAPHLRLTIVQD----DKEFLANVSESLTDEADDLDVPFQVHC-VAGQIETLDFNDLhg 218 **************75589*************************....***********************.7999**99966 PP GRAS 195 ..rvkpgEalaVnlvlqlhrll......................................................................desvsle 221 +k+gEa a+ + qlhrll + +++ Do020013.1 219 vlGLKSGEARAIVCTKQLHRLLasvddaasssfsaghhfnqmasiarlqqmaassscppsiggggvacevhddddsyrspatplgfvsppltTPRFQMP 317 667889********************************************************************************995555555 PP GRAS 222 serdevLklvk.slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWr 316 + +L++ + +sPkvvv++eqea+hn+ sF +rf+eal+yy+a fdsl+a +++ er+ vEr++lg+ei++v+ ega+r erh +l++W Do020013.1 318 PALVGFLSAARaAVSPKVVVLTEQEASHNGVSFRKRFTEALNYYAAAFDSLDAAAAAYRrpvAERADVERAVLGEEIRDVLLREGARRLERHDRLHQWG 416 5666699459*********************************877665555679******************************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+e aGF++vpls+ a q + +lr+++++g + e+ g+l+l+W++ pL+svSaWr Do020013.1 417 LRMEVAGFRSVPLSYIAIRQGDDMLRMCGVRGCESREHGGCLLLCWRSWPLYSVSAWR 474 *******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.068	1	454	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-87	27	474	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MQHDGSMCGP ALPQQQQQHG RVARLGRALC ECAADIEAGS TEKAARRLSQ ATGLTAATGD 60 GPLPRLAVLV ADGLARRLIR PMVPAVAGAL IDPSDHLNRC CVRAARRSFF ELSPFPKAAV 120 AVVNRVILEA MENEKNVHVI DFAGPAAQPC QWIQLLRDFH SRPEGAPHLR LTIVQDDKEF 180 LANVSESLTD EADDLDVPFQ VHCVAGQIET LDFNDLHGVL GLKSGEARAI VCTKQLHRLL 240 ASVDDAASSS FSAGHHFNQM ASIARLQQMA ASSSCPPSIG GGGVACEVHD DDDSYRSPAT 300 PLGFVSPPLT TPRFQMPPAL VGFLSAARAA VSPKVVVLTE QEASHNGVSF RKRFTEALNY 360 YAAAFDSLDA AAAAYRRPVA ERADVERAVL GEEIRDVLLR EGARRLERHD RLHQWGLRME 420 VAGFRSVPLS YIAIRQGDDM LRMCGVRGCE SREHGGCLLL CWRSWPLYSV SAWRPDRGSA 480 YGVGSEYLPL SAPPAPAPSI EELMC

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MQHDGSMCGP ALPQQQQQHG RVARLGRALC ECAADIEAGS TEKAARRLSQ ATGLTAATGD  60
GPLPRLAVLV ADGLARRLIR PMVPAVAGAL IDPSDHLNRC CVRAARRSFF ELSPFPKAAV  120
AVVNRVILEA MENEKNVHVI DFAGPAAQPC QWIQLLRDFH SRPEGAPHLR LTIVQDDKEF  180
LANVSESLTD EADDLDVPFQ VHCVAGQIET LDFNDLHGVL GLKSGEARAI VCTKQLHRLL  240
ASVDDAASSS FSAGHHFNQM ASIARLQQMA ASSSCPPSIG GGGVACEVHD DDDSYRSPAT  300
PLGFVSPPLT TPRFQMPPAL VGFLSAARAA VSPKVVVLTE QEASHNGVSF RKRFTEALNY  360
YAAAFDSLDA AAAAYRRPVA ERADVERAVL GEEIRDVLLR EGARRLERHD RLHQWGLRME  420
VAGFRSVPLS YIAIRQGDDM LRMCGVRGCE SREHGGCLLL CWRSWPLYSV SAWRPDRGSA  480
YGVGSEYLPL SAPPAPAPSI EELMC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-17	31	475	24	379	Protein SCARECROW
5b3h_D	2e-17	31	475	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980153.2	0.0	scarecrow-like protein 3
TrEMBL	A0A1E5WC77	0.0	A0A1E5WC77_9POAL; Scarecrow-like protein 3
STRING	Si028262m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-71	scarecrow-like 3