PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020011.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 813aa    MW: 88237.8 Da    PI: 5.1275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020011.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.2e-085987125
                --S---SGGGGTS....--TTTTT-SS-S CS
     zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                +kt+lC++f+r G     C++G++C++aH
  Do020011.1 59 WKTSLCSYFRRRGagaeGCSHGESCRYAH 87
                8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.34E-65494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-135495IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4695890IPR000571Zinc finger, CCCH-type
SMARTSM003560.00145889IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-65987IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3302.9E-4124180IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168723.973223813IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.95E-34225251IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.95E-34283386IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.95E-34445553IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.2E-43468553IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.2E-43695753IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.95E-34701813IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.7E-6705749IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300709741IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.2E-43788813IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MEDDKTPPPP QPQPELAGEK RKREEDGSPD AATEDAPPSA PSASGEDEAS GGITRHPMWK  60
TSLCSYFRRR GAGAEGCSHG ESCRYAHTEE ELRPRPDGTW DPTSDRAKKL RKVAAEDKEE  120
AEEEEGISYV TAKKKKGMTV GFVTFGSVEQ LTNAVQVLRE NPSGGKEIKI ADANRRSHQK  180
VHAAEGPADN GTATENGSNP ATPAGEAYAP EAVASSKKSA RDAVTPLAHM PYNDQLEHKK  240
HSMAQILKRL TRNARKACPP AIPLPNWVFK SKEIGGLPCK LEGILESPVV NGYRNKCEFS  300
VGYSLEGKKT VGFMLGNFRE GVTAVEEPVN CPNVSEISCK YAQMFQHFLQ SSSLPLWSRV  360
DNCGFWRQFT VREGRCPAEV VSQNAESQIS EVMLIVQVCS TGVEEAVMKE EFDKLSTALI  420
QGAAICSPPL PLTTIVVQDH KGISNAAPAD CPLTPLLVPK GVQLEAEDKT RIHDHISNLK  480
FSISPTAFFQ VNTLAAERLY TLAGDWANLN SDTLLFDVVG IEMNESAVSD AHRNALINDI  540
KNCRFVCGKA EDVVGSLLTE YLGPPQQHIA ASERNSGIND TSKDEEIINC SENDGENMGS  600
STEKNDNGET EQPIDTSADL PTCASDEEIK GKSMDRVNKE AGSSSDEHNE AAGEQNCGKA  660
SLINDESTDT TPADSLEDGK TCQDGSSIPN NNALAAGACQ FKNVVAIVDP PRVGLHPTVI  720
KALRTHPLIR RLVYISCNPD SLVANAIELC TPTSEKQEKN KGNRGWRSMS AAGLARQRTK  780
SMPNSEPFIP KRAMAVDLFP HTSHCEMVML FER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824350.10.0zinc finger CCCH domain-containing protein 24
TrEMBLA0A1E5WHT00.0A0A1E5WHT0_9POAL; Zinc finger CCCH domain-containing protein 24
STRINGPavir.J09831.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein