PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019580.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 530aa    MW: 57778.5 Da    PI: 6.2655
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019580.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.62.3e-12126150125
     G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                 kprlrWt +LHerFv+av+qLGG+e
  Do019580.1 126 KPRLRWTADLHERFVDAVAQLGGPE 150
                 79*********************98 PP
2G2-like491.4e-152893172755
     G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 AtPk +l++m+v+gLt++hvkSHLQkYRl
  Do019580.1 289 ATPKGVLRIMGVQGLTIYHVKSHLQKYRL 317
                 9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-28123151IPR009057Homeodomain-like
PfamPF143792.5E-20219265IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
SuperFamilySSF466891.15E-5288317IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-11289318IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.2E-28289318IPR009057Homeodomain-like
PfamPF143792.9E-23350395IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MRAFQASATT RTSQFTRVKR RERGNRGREE SLPVESGSSS REEKRELARK GGEKAEGLFL  60
GLDPSLLGRK KEKKALSLLL LLLRRAAGGA EEEEMFPPGL IHHRPDGPAA GDPGGGPSLV  120
LTADPKPRLR WTADLHERFV DAVAQLGGPE SEPSSPSPSL LGIGIGKSDT KNYLEDNGCQ  180
GAYSVPPEEP SSASYLLDAQ SGMSVSPRVP AQDVKESQEV KEALRAQMEV QRRLHEQVEV  240
QKRVQIRMEA LQKYIDSILE SACKMVTEQF ASSGFSISDP DLPEISPGAT PKGVLRIMGV  300
QGLTIYHVKS HLQKYRLAKY IPDASTDGNK ADNKDPGDLL VGLEGSSGLP ISEALKLQME  360
VQKRLHEQLE VQRQLQLRIE AQGKYLQKII EEQQRLTGVK SETPAAGASV TVSSDQFPDS  420
ERTEPSTPAP TSESPTQVGA SNRDTGEQTE ATKSTCRGDS HSRHEPLTPD SNCQNGSPPT  480
SPNHERAAKR QRGSGAEFLD ADTEFSLPRH IFESSSGPEF QQYSMSYSGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0166280.0BT016628.1 Zea mays clone Contig461 mRNA sequence.
GenBankBT0332050.0BT033205.1 Zea mays full-length cDNA clone ZM_BFb0066I21 mRNA, complete cds.
GenBankBT0398990.0BT039899.1 Zea mays full-length cDNA clone ZM_BFc0050C09 mRNA, complete cds.
GenBankBT0411540.0BT041154.1 Zea mays full-length cDNA clone ZM_BFc0181P18 mRNA, complete cds.
GenBankBT0858910.0BT085891.1 Zea mays full-length cDNA clone ZM_BFc0076P02 mRNA, complete cds.
GenBankBT0863350.0BT086335.1 Zea mays full-length cDNA clone ZM_BFc0154D10 mRNA, complete cds.
GenBankEU9764460.0EU976446.1 Zea mays clone 894637 MYB-CC type transfactor mRNA, complete cds.
GenBankJX4699000.0JX469900.1 Zea mays subsp. mays clone UT3140 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802918.11e-162myb family transcription factor PHL7-like
SwissprotQ9SJW04e-72PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1E5VPC20.0A0A1E5VPC2_9POAL; Myb family transcription factor PHL7
STRINGSi030592m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-50G2-like family protein