PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019464.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 282aa MW: 30740.6 Da PI: 9.2337

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019464.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ I++ + + Rt+ q+ s+ qky Do019464.1 101 PWTEEEHRKFLDGLRQLGKGDWRGISKGFVTSRTATQVASHAQKY 145 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.416	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	1.44E-17	95	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-18	97	149	IPR006447	Myb domain, plants
SMART	SM00717	5.1E-10	98	148	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	99	144	IPR009057	Homeodomain-like
CDD	cd00167	7.25E-10	101	146	No hit	No description
Pfam	PF00249	1.5E-11	101	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDRPEEESER KPAAPVVLRL FGVDVRRVAD EGLDKDNDGD GDGDFMLKKS TSLPNLTSMD 60 LALQPGEAGY GKGYASDDLE LASRQQKRRR RKVQERKKGI PWTEEEHRKF LDGLRQLGKG 120 DWRGISKGFV TSRTATQVAS HAQKYFLRQT NPGKKKRRAS LFDVGIADYS DDQAVPSPPN 180 STSKPAPTQE IIHTDRGDVP IPSYRGFGGI LGNNIQVNKL TNYFEAPMAH AETSLASMAS 240 VLETASSINS LDLSIAVNNL ELSIAPPARC GYGGAAGAIK VL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	KRRRRK
2	86	97	KRRRRKVQERKK
3	87	97	RRRRKVQERKK
4	153	157	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019464.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	1e-160	transcription factor MYBS2
Swissprot	B8BI93	5e-89	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	5e-89	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A1E5V496	0.0	A0A1E5V496_9POAL; Transcription factor DIVARICATA
STRING	Si036966m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]