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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do019452.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
SBP |
| Protein Properties |
Length: 403aa MW: 41984.1 Da PI: 8.8131 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do019452.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 130 | 8.5e-41 | 92 | 167 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
+CqvegC++dl+ ak yh rhkvC++hskap v v+g+eqrfCqqCsrfh+l+efD++krsCrrrL +hnerrr++
Do019452.1 92 RCQVEGCNVDLTGAKPYHCRHKVCDMHSKAPLVRVNGIEQRFCQQCSRFHQLHEFDQTKRSCRRRLTGHNERRRRP 167
6*************************************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MATAGSAGGG GSGSGGDDHF HGLKFGKKIY FEDAGASGSG SGSGSSGGSG SASEAPPQRP 60
PPPSASPRAA GGGGRRGRGA AGGASATPAP ARCQVEGCNV DLTGAKPYHC RHKVCDMHSK 120
APLVRVNGIE QRFCQQCSRF HQLHEFDQTK RSCRRRLTGH NERRRRPPAG PLASRYGHFA 180
TSFREEPGRF RSFLLDFSYP RVPTSMRDGW PAVRPGERVP GSIQWQASLD PHNHHSAVTG 240
YGAHSYGGQA SSSSGPPVFP DPELPPGGCL AGIPADSSCA LSLLSTQPWD TTHSTGHSRA 300
SSMPATAGFD GNPVAPSLMA SSYVAPSPWP GSRGHEGGRN VPPQLPPHVP LDEVHSGSSS 360
HHGQFSGELE LALQGNRPAP APRVDQGSTS TFDQASNTTD WSL
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Miura K, et al.
OsSPL14 promotes panicle branching and higher grain productivity in rice.
Nat. Genet., 2010. 42(6): p. 545-9
[PMID:20495564] - Jiao Y, et al.
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.
Nat. Genet., 2010. 42(6): p. 541-4
[PMID:20495565] - Springer N
Shaping a better rice plant.
Nat. Genet., 2010. 42(6): p. 475-6
[PMID:20502488] - Wang Y,Li J
Branching in rice.
Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9
[PMID:21144796] - Wang J,Kong L,Gao G,Luo J
A brief introduction to web-based genome browsers.
Brief. Bioinformatics, 2013. 14(2): p. 131-43
[PMID:22764121] - Luo L,Li W,Miura K,Ashikari M,Kyozuka J
Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.
Plant Cell Physiol., 2012. 53(10): p. 1793-801
[PMID:22960246] - Liu Q, et al.
The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
J Integr Plant Biol, 2015. 57(10): p. 819-29
[PMID:25677853] - Cruz-Garcia GS,Struik PC
Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1.
Econ. Bot., 2015. 69(2): p. 99-113
[PMID:26160981] - Srikanth B, et al.
Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.
Gene, 2016. 576(1 Pt 3): p. 441-50
[PMID:26519999] - Perignon M, et al.
Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial.
Nutrients, 2016.
[PMID:26751473] - Kim SR, et al.
Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
Rice (N Y), 2016. 9(1): p. 12
[PMID:26987543]
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