PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019114.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 647aa    MW: 68630 Da    PI: 4.4568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019114.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.79e-29191221100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf..paeq.pkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                 +CaaCk+lrr+C+++Cv+apyf  pa+  +++fa+vh++FGasn  ++lk++  + er +a+++lv eA ar rdP  G+v+++  lq  +e++ +++a
  Do019114.1  19 PCAACKTLRRRCVQGCVFAPYFpgPADGySSRFAAVHRVFGASNAARMLKDVeLPGERARAAETLVEEALARERDPAFGCVSFVGVLQILIEKALEQVA 117
                 7*********************66666668**********************55667****************************************99 PP

      DUF260  96 llkee 100
                 +++ee
  Do019114.1 118 RVREE 122
                 99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.62118123IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-2919120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MPEDEAAAAA AAQQPAQSPC AACKTLRRRC VQGCVFAPYF PGPADGYSSR FAAVHRVFGA  60
SNAARMLKDV ELPGERARAA ETLVEEALAR ERDPAFGCVS FVGVLQILIE KALEQVARVR  120
EEIAGEFGAE AAAEPVDVAA AYPEVRLEAR KQAEAALAHA RKRDAEMLAA RRDVDIKWWQ  180
LCEAVKHAGQ KGRSADDQMA EAQNTAAAED SWSEQTMLTP PPLAAAGTEL DFAEGNGHPR  240
QQMAETPAAA LQLAGTGTSF LTRQQVAASG ELAKTLDTRL RQSAAAQEYN DAAAAHSAPM  300
GLDVTPRLQQ PPQPQDMVLQ MAEAAAATDQ ELLQMLMQQL AAAEAPAKQD TVIHLLAAGA  360
PQFDNLAARY EDTELDIMLG HGHPDMHQQT VQQMAEAQRV AAAAGEVAGE QGMAMPHAAA  420
AELAGQGMMQ LAAGAQQYAQ TELNITLGHG TQQEIVQQMV QAQQLAAAAE LAREQVAAAE  480
LAREQVMIVQ QARQQEMEMA MVQATVAQKG PVVQYSETGL GISLGQGHPY RHQPTVQKLA  540
DAVEVARDAS TTTMQQVAAY TDAEHGSDSG ATVAFQPPGS AEAAPFLVEQ QPPLQGQAAR  600
ALGLQLDSSL LALLPSLGQP LAQVSQQQSA DGGDKDQCSD LTAYFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-24161398131LOB family transfactor Ramosa2.1
5ly0_B7e-24161398131LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803413.11e-141uncharacterized protein LOC112882549
TrEMBLA0A1E5V5E90.0A0A1E5V5E9_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-22LBD family protein