PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019108.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 276aa MW: 28075.4 Da PI: 7.499

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019108.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138	3.4e-43	37	134	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+q+++ela++ Do019108.1 37 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQVQQELARAS 134 7*********************************************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.833	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-43	37	133	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MATSSASSVP PASTGSVITV ASPSTGGSTI SGGTGSPCAA CKFLRRKCQP DCVFAPYFPP 60 DNPQKFVHVH RVFGASNVTK ILNELHPYQR EDAVNSLAYE ADMRLRDPVY GCVGVISILQ 120 HRLRQVQQEL ARASYELSKY QAAAAEATAA SVAVGCNGAA AGMAADFVGN PVPNCTQNFI 180 NVGHSAAASI GGAGFVQHDH FASMQMLAAR SYDGEAATTA IARLGMNGGG GGGYGFGYSS 240 GIGAGHGVVS GLGQISSGQF LKPGTAGGDE QPTAAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-53	31	140	5	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-53	31	140	5	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019108.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY795560	1e-136	AY795560.1 Triticum aestivum AS2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808846.1	1e-141	LOB domain-containing protein 6-like
Swissprot	Q32SG3	1e-110	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	A0A1E5V598	0.0	A0A1E5V598_9POAL; LOB domain-containing protein 6
STRING	Si024114m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	1e-54	LBD family protein