PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 178aa MW: 19596.2 Da PI: 4.8999 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.8 | 5.9e-11 | 54 | 134 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ff++ +++ ++ +lv+p + ++ +++ + +l grsW ++ + k ++ + + W++F+ +ngL++gD +vF+l++ Do019090.1 54 FFTTVMSKTQVQKFQLVIPTRLHRHLP--EAR-VPAVL-LCGGRSWAASYCGDLKCKK--IDAXWRDFALDNGLRVGDACVFELIRP 134 788888888999999*****9985443..222.23333.347********66655555..8999*******************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-17 | 48 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-14 | 50 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-14 | 53 | 156 | No hit | No description |
PROSITE profile | PS50863 | 10.983 | 54 | 158 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-9 | 54 | 135 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0085 | 54 | 158 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
METPGFPRKQ QQLPDLSIIK PKVEPCEEEE HSPPLPPLAS DDWEVTPLSG EHPFFTTVMS 60 KTQVQKFQLV IPTRLHRHLP EARVPAVLLC GGRSWAASYC GDLKCKKIDA XWRDFALDNG 120 LRVGDACVFE LIRPTDGAGT ECAGSGKVEF RVQVLRGGLP EEITSMGATS DEPLVIVD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811196.1 | 6e-88 | B3 domain-containing protein Os06g0112300-like isoform X1 | ||||
Swissprot | Q9LHY9 | 5e-46 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A1E5W7Y6 | 1e-126 | A0A1E5W7Y6_9POAL; B3 domain-containing protein | ||||
STRING | Pavir.Db02470.1.p | 4e-80 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Publications ? help Back to Top | |||
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