PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018887.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 299aa MW: 32213.7 Da PI: 10.9419

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018887.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.5e-32	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt+eLH++Fv+av+ LGG+ekAtPk il+lm+v gLt++hvkSHLQ+YR+ Do018887.1 23 PRLRWTSELHRSFVRAVDCLGGQEKATPKLILQLMNVRGLTIAHVKSHLQMYRS 76 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.204	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-30	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-16	23	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	23	76	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-7	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MRGAGGGRNG AATTRRYNRS TVPRLRWTSE LHRSFVRAVD CLGGQEKATP KLILQLMNVR 60 GLTIAHVKSH LQMYRSSGHD TRKREMQPRL GHLKHSFAID EGGPKEFICP PMKRAKAGAE 120 AAATATHESM QGNSDMGAPG TGRCGDDYTR ALPVGGRSIT ECLRWQRQRD AAAASALQEL 180 GFWVQGTEPF KIGRPIANRL SPVVRQLSSK EIKCENRRFL FGTAPRDEAA KRRSPSRPPA 240 SIDPKAVAAV SSGPSEASCV LSPPPSSTSF SGCSGTGRGS CLFTGQRINL DLSLSICGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	24	77	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	24	77	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	24	77	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	24	77	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018887.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087811	1e-118	BT087811.1 Zea mays full-length cDNA clone ZM_BFb0210E07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955145.1	1e-175	uncharacterized protein LOC101762085 isoform X2
TrEMBL	A0A1E5VJV0	0.0	A0A1E5VJV0_9POAL; Uncharacterized protein
STRING	Pavir.Ab02674.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-27	G2-like family protein