PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018807.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 674aa    MW: 71837.5 Da    PI: 7.0744
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018807.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08282304426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++f+r G C+ Gd+C F+Hg
  Do018807.1 282 VPCPNFRRPGGCPSGDSCEFSHG 304
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.66E-1472151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1572152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.373103IPR002110Ankyrin repeat
PROSITE profilePS5029717.34373148IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7367397IPR002110Ankyrin repeat
PfamPF127963.1E-973140IPR020683Ankyrin repeat-containing domain
CDDcd002042.08E-1375151No hitNo description
PROSITE profilePS5008812.716108143IPR002110Ankyrin repeat
SMARTSM002480.006108140IPR002110Ankyrin repeat
PROSITE profilePS5010313.995278306IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4278305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.3E-5279307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6282305IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6282304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4311343IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812314338IPR000571Zinc finger, CCCH-type
SMARTSM0035640314337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MGHLADLACA GEASRSHLAG GGRRDRLAAL LELAAADDAA GFREALGGAG GDGDTAELAD  60
GVGLWYGRSK AYEPRTPLMV AATYGSAEVV SLLLGLGCVD VNRRPGVDGA TPLHCAASGG  120
SRNAVAIIKL LLAAGADPVT PDSAGRFPAD VVLAPPASPD TLGDLEMLLG RRRGLAVATS  180
VPSGSSSPPL SSSPDEGNRS PSSRSSSLSP ITVDRAKKEY PVDPTLPDIK SSVYASDEFR  240
MFAFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDSCE  300
FSHGVFESWL HPSQYRTRLC KEGAGCARRI CFFAHDEDEL RHVPHNSGAG LLSPCASSSI  360
DMTAAAALGL LPGSPTRHFV PPPLSPSAAN NGGAAAHWLQ GSRLRSSFNA RDAQVDDLGA  420
LLEWESQYLG ALSLPQSNRS QPRLSTGLSI RATAIAPSNL EEMYASDMAM SPRFTNDQSH  480
SVYSPAHKSA LLNKFHQQKG LLSPVNTNRM YSPRGLDPSI VHSPFGGMSP RSPRTMEPTS  540
PLSARVGASV TQRDMFDHFS SMNKHQLPSV GSPRNLNASW GNIGTPKSKV DWGVDDEELV  600
RLRHPAQSGA AEEEPDVSWV QSLVNNAELN GKRGEMAGMA SRPMSRPDLS SQGDLVDQTL  660
IASWLEQQMH LEPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A7e-1124433714118RING finger protein unkempt homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543660.0BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds.
GenBankBT0544470.0BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801940.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A1E5VK790.0A0A1E5VK79_9POAL; Zinc finger CCCH domain-containing protein 50
STRINGPavir.J07041.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-145CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]