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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 629aa MW: 65420.3 Da PI: 8.0098 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 263 | 322 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ Do018705.1 263 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 322 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.3E-32 | 248 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 256 | 323 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.311 | 258 | 324 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 263 | 323 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-27 | 264 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MIKGVKQLGS HEEQLTDEIK DDDHILAGNL FKSLHKSSSR KEACSPNPSE RSQMDEASNQ 60 ASTNSKDHNK VEEDRLASTR AEMGEVREEN KRLKTMLSRI VEDYRSLQLH FHDVLQQGQA 120 NKKLADPATG APTSIEEPEF VSLSLGTSTS MRKKEEKSSV SEGKGREHSM NIKGGLSLGL 180 SDCKVGATNN ARIQSDVLTL SPEGTSEESK DDATETAGQQ WPPSKTLKNL RSVGAEAEDD 240 IGPLPQAKKA RVSVRARCDA PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAAGCPVRKQ 300 VQRCADDMSI LITTYEGTHN HPLSASATAM ASTTSAAASM LTSGSTTTSL RFPAASPAAA 360 AGLSFGFPPA AHHDASRHFF LPNGGTASIT STPSYPTITL DLTSPAATSQ AFSLNNRFSS 420 SSFGHGGARY PPTSFSFSNS GPSALSGAAW PAAGGAGYLS YGSPAASLFN GGKLSSFEAA 480 LSSINGRQQG GEVPALYHQQ QKASASGSAP PGVLTDTIAK AITSDPGFHT ALAAAITSYV 540 GTQGGKSSSA GGGEGGSQLQ GLKWGQHIGL APSPSSAGAA CSSALLARSP STTAAAEQGS 600 NGHRSFLQPS LGLSGSHSAS TSPVENVEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 263 | 325 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 263 | 325 | 17 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018705.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811456.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | A0A1E5VBA1 | 0.0 | A0A1E5VBA1_9POAL; Putative WRKY transcription factor 72 | ||||
STRING | Pavir.Db02233.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-62 | WRKY DNA-binding protein 72 |