PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 257aa MW: 27606.3 Da PI: 8.5125 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 44.7 | 3.1e-14 | 1 | 30 | 29 | 59 |
ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRrevee 59 mps geeg+ +alkC+ACgCHRnFHR+eve+ Do018629.1 1 MPS-GEEGSLEALKCSACGCHRNFHRKEVED 30 566.889*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 11.866 | 1 | 27 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-9 | 1 | 29 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.3E-12 | 1 | 28 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.06E-21 | 125 | 197 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-31 | 128 | 198 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-27 | 138 | 194 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MPSGEEGSLE ALKCSACGCH RNFHRKEVED DDDGMYAAGE SFGHRAARRL LAPALPHHSK 60 AGGGGLLVSA ADPYGAYAAA RGLPPALPPP GHGHHHHHQY VMPLSMIHHT SESDDMDGAT 120 AGGGDPARGG SGGSSSSKKR FRTKFTPEQK ARMLEFAERV GWRLQKLDDG MVQAFCQEIG 180 VKRRVLKVWM HNNKHNLATK RLELEASPQQ DQAMAAMPPS PPPQMPLQMV FPPPPQAAGP 240 SCHRGVPGSP PPPLKLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 137 | 196 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018629.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966855 | 1e-155 | EU966855.1 Zea mays clone 297761 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678039.1 | 3e-99 | zinc-finger homeodomain protein 4 isoform X1 | ||||
Refseq | XP_008678040.1 | 1e-99 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678042.1 | 1e-99 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678044.1 | 1e-99 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678045.1 | 1e-99 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_008678046.1 | 1e-99 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_020408059.1 | 1e-99 | zinc-finger homeodomain protein 4 isoform X2 | ||||
Swissprot | Q53N87 | 6e-62 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A1E5UIC2 | 0.0 | A0A1E5UIC2_9POAL; Zinc-finger homeodomain protein 4 | ||||
STRING | GRMZM2G068330_P02 | 1e-98 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-27 | homeobox protein 21 |