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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do018542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 731aa MW: 76393.6 Da PI: 5.86 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 280.7 | 4.2e-86 | 372 | 730 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 e L ++A+a + g+ a+++Larl+++ p g+p+ R a+yf+eAL l++ + +++ ts+ +++ ++aa+k fs++sP+l+f+++ta q Do018542.1 372 LEELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYFKEALLLALTD-----GHHGSTRLTSPLDVALKFAAYKSFSDLSPVLQFANFTATQ 465 57899*************************************************.....66667788888889************************** PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 a+l++++ +++ +iDfd++ G+QW+++lq+La R+ + p+l++T+++s++s++ el+ t+++L++fA+ lg+pfefn++ +l+++++ e Do018542.1 466 ALLDEMACTtaSCIRVIDFDLGVGGQWASFLQELAHRRgtgnVSLPMLKLTAFVSSASHHPLELRLTRDNLSQFAADLGIPFEFNAI---NLDAFDPAE 561 ****998665699************************97655569*****************************************9...9******99 PP GRAS 194 Lrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L + +E +aV+l + +l +L+lvk+l Pkvvv +++ +d+++ +F ++f+++l+ ++ l+dsl+a ++++e+++k+Er+l++ Do018542.1 562 LIAPTaDELVAVCLPVGCSART---PPLLM----LLELVKQLAPKVVVAIDHGSDRGDLPFSQHFMNCLQSCMFLLDSLDAA-GTDAEAASKIERFLIQ 652 966668********99666554...66666....9********************************************999.8999************ PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++v + ++ e+++ Wr+ +++aGF pvpls+ a++qa++ll++v+++g++ve+ l l+W++ +LvsvS+Wr Do018542.1 653 PRVEDAVLGRRRA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKCGMGLALYWQRGELVSVSSWR 730 *******977665.....99**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.691 | 345 | 710 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-83 | 372 | 730 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MRAAPFSAEG NWAGTIEALL WPEGKGGGGG RGGGGGGGDL LLVEPTSVLD CRRSPSPPYS 60 TSTLSSSLGA AAGDSSSSGV AAVSENSAAA AEATKWAAPG EHGGGGGGGG GGGRKEEWAG 120 GELPPIPGAL DVGFVGEEGW DAMLGDAAAA AGQEQTFLNW IMAAPGEMEP PAPLQQHHQL 180 LGNAAGFGFP ASDPLGFSLQ HHPGGGGGAS AGALASDLSS PGARSLTSSS GSSSKATSTF 240 GILPTEAPLQ QPPATTMPFH DGADIKPPLL GVPSASLLLN QHQPSPAASF FMPLPSFPDH 300 QHQPHLPPPP KRHHSMPDNL FLLQNQLQPP QQQGLPFPPL HTTAPFQLQP SLQPPRGAMK 360 TTAAAQQQQQ LLEELAAAAK AAEVGNSIGA REILARLNQQ LPPIGKPFLR SASYFKEALL 420 LALTDGHHGS TRLTSPLDVA LKFAAYKSFS DLSPVLQFAN FTATQALLDE MACTTASCIR 480 VIDFDLGVGG QWASFLQELA HRRGTGNVSL PMLKLTAFVS SASHHPLELR LTRDNLSQFA 540 ADLGIPFEFN AINLDAFDPA ELIAPTADEL VAVCLPVGCS ARTPPLLMLL ELVKQLAPKV 600 VVAIDHGSDR GDLPFSQHFM NCLQSCMFLL DSLDAAGTDA EAASKIERFL IQPRVEDAVL 660 GRRRAEKAMA WRAVFTSAGF APVPLSNLAE AQADCLLKRV QVRGFHVEKC GMGLALYWQR 720 GELVSVSSWR C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-25 | 371 | 730 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 36 | GGRGGGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do018542.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063450 | 0.0 | BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824521.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A1E5WGG8 | 0.0 | A0A1E5WGG8_9POAL; Scarecrow-like protein 6 | ||||
STRING | Pavir.Ga01057.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-89 | GRAS family protein |