PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018521.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 710aa    MW: 76264.3 Da    PI: 5.8054
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018521.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.79.8e-27191244155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 ++r++Wt eLH++Fv+av+ + G+++A Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Do018521.1 191 RQRVKWTGELHRKFVKAVDLI-GINRAAPKNILEVMNVDGLTRENVASHLQKYRT 244
                 58*****************99.********************************7 PP
2Response_reg74.34.7e-25121211108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                   vl vdD+ + +++l++ l++ +y +v++++d+++al++l+ek+    ++l++ D+ mp++dG++ll+ i  e  ++p+i+++a++e e++ + ++ G
    Do018521.1  12 VLAVDDDCVSLMILERQLKHCNY-NVTAVTDAKKALDMLREKKdedqFQLVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANNETETMMKGINHG 106
                   799********************.***************88888999**********************6644.8********************** PP

                   ESEEEESS--HHHHH CS
  Response_reg  94 akdflsKpfdpeelv 108
                   a d+l+Kp+  e+l+
    Do018521.1 107 ACDYLVKPVRFEQLR 121
                   ***********9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.4E-389148No hitNo description
SuperFamilySSF521721.2E-339132IPR011006CheY-like superfamily
SMARTSM004488.1E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.15111128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2212121IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.58E-2813128No hitNo description
PROSITE profilePS5129413.746188247IPR017930Myb domain
SuperFamilySSF466891.25E-18188248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26189249IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-23192244IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MDTGEFPAGL RVLAVDDDCV SLMILERQLK HCNYNVTAVT DAKKALDMLR EKKDEDQFQL  60
VISDVVMPDI DGFKLLELIG LEMDIPVIML SANNETETMM KGINHGACDY LVKPVRFEQL  120
RGIWIHVLRN SKSDPRNNTS GNDNAGQKLQ SGDGGKGEKN CANRTRKDSK KNKKVMDGAD  180
ENKENTSTQK RQRVKWTGEL HRKFVKAVDL IGINRAAPKN ILEVMNVDGL TRENVASHLQ  240
KYRTCLKKLK DGELKDGELK NTNPFIDEPK SWWRGWVPAN SNTDVPGSSK HHPELGRYKS  300
TPSFFGSPSS SNLFARMNSP SAFGTHSFLP TQSVEHMSSQ RNLGIPRQDM EPVGHGINLA  360
KGAVPVLVQD VSRFTSSGNS YEPILSGGLS GASFPSGPSG RSIANISNGV VFNTSKPLSL  420
GISGSSYANI ADDSLPLASM PFPSPCSCRG GKILGASRGV PFEDIADGEV LAPSGNLPLH  480
PPELVNQPSV QIQSSSAGLF NQVATEADQS AGPNNSSNSQ KADVPSRFPD LGHNLGVSRG  540
PSQGNTININ QLSRLAASSG HIPTFGNVYQ NQITEIMEKI APMVGLCDQV APFNFGSNTQ  600
YTAMPIGNSD KGSSSSTRPT LPNLQIDDSV MPIQMLNGGG ASGNLPEGGS IDQQAVGDEV  660
INSNESLVGT TGAQNGASGD LDEFFANLVN EQDFINNGDA FFGGYLEFSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21187249163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018521.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.10.0two-component response regulator ORR25-like isoform X1
TrEMBLA0A1E5W0M20.0A0A1E5W0M2_9POAL; Two-component response regulator ORR25
STRINGPavir.Db00757.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-77response regulator 12