PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018520.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 734aa    MW: 79630.6 Da    PI: 6.3123
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018520.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.26.6e-27217270155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 ++r++W  +LH++Fveav+q+ G ++A+Pk+ile+m+v+gL++e+v+SHLQkYR+
  Do018520.1 217 RQRVQWCGDLHRKFVEAVNQI-GMDRAVPKKILEVMNVDGLSRENVASHLQKYRI 270
                 58*******************.********************************7 PP
2Response_reg57.76.5e-206014526108
                   EEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
  Response_reg  26 vaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                   v++++d+e+al++l+e++    +Dl++ D+  pg+dG++ll+ i  e  ++p+i+++a++e e++++ ++ Ga d+l+Kp+  e+l+
    Do018520.1  60 VTAVTDAEKALDMLRERKdrdqFDLVISDVVRPGIDGFKLLELIGLEM-DMPVIMLSANNEAETMIKGINHGACDYLVKPVRLEQLR 145
                   8999**********88888899**********************6644.8**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-329184No hitNo description
SuperFamilySSF521724.7E-259155IPR011006CheY-like superfamily
SMARTSM004482.6E-1610148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.80311152IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.76E-2213152No hitNo description
PfamPF000721.5E-1557145IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466896.45E-18214274IPR009057Homeodomain-like
PROSITE profilePS5129410.475214273IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-27215275IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-23218270IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MDTCEFPAGL RVLAIDDDRV SLMILEKQLK HCNYNEVESR SVFLGGFVLI LLEFLWCGLV  60
TAVTDAEKAL DMLRERKDRD QFDLVISDVV RPGIDGFKLL ELIGLEMDMP VIMLSANNEA  120
ETMIKGINHG ACDYLVKPVR LEQLRGIWMH VLRNSKSDPR NSTSGGNDNA GQKLQSGDGG  180
KKGEKNCANH TRKYSKKNKK DVDGADEDKE NTSTQKRQRV QWCGDLHRKF VEAVNQIGMD  240
RAVPKKILEV MNVDGLSREN VASHLQKYRI YLKKLNEGKL KNSSPFVDEP KAWRNDWMPD  300
NSNMNVPESS KHHPELGGYQ SGPSFVGSLS SSNLFSRMNS PPAFGTRPFL PTQSVQVMSS  360
QRNLGIPRQD MEPVYRGVNL PKVDVPELVQ DLSRFISSVP PISSGGLSGA NFPSGPSGSS  420
FANISNGVVF NTSKPLSHGI AGSSFENTSN DIPPLATGMY FPSSRSCSSY ASILRGKILG  480
ASRGIPFEDV ADGEMQAPSG HLPLQSPELV KQPSVQIQSP SAALFNQVTR EAHQFAGPSN  540
SSNSGKAAVP SRFRDLGRNV GISKGPSQGN IIKINQLARL AASSGQIPTL GNVYQNQIAE  600
IMAKTAPMVG LSEQVAPFNF GSNTQYTAMP IGNSNLGSSS STSPALPNLQ IDNSVMPTQI  660
LNGGGASGNL PEGGTINQQV VGDQVINNNK FLVGTSEIQN EASGDLDDFF ADWVNEDFFN  720
SGDAFISGDW EFAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21213276164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681872.10.0two-component response regulator ORR25
TrEMBLA0A1E5W0M60.0A0A1E5W0M6_9POAL; Two-component response regulator ORR25
STRINGSi007844m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-74response regulator 12