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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Do018324.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 415aa MW: 45449.6 Da PI: 10.2505 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do018324.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 336.9 | 5.2e-103 | 72 | 415 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd..................maflqrdkalaer 70
mdddgs rn+g+y+p k++lglqlmss++ +rd+k ++ +++ ++ +++++rd m+f +++++l+
Do018324.1 72 MDDDGSLGiRNWGFYDPV---KSDLGLQLMSSMPaDRDTKSllpagaflqQHGHHNAPHQLHSHHSRDsngggasggmptephsihMDFSRNEAWLHP- 166
9*****999*******99...99**********99******9******98666777788889999*********************************. PP
GAGA_bind 71 nkalverdnkllalllvensla.................salpvgvqvlsgt.ksidslqqlsepqledsavelreeeklealpieeaaeeake...kk 148
++ ++r++k+l+ +v + +++p+g+++++++ ++++++q + ++ql++++ +e+ + l +e++ +++e kk
Do018324.1 167 SHHQHPREQKVLHARPVGPAGHvghprhgghpgngghavHHHPTGYGMMPDApHTLQMMQPQLQSQLQEPPPC--KEDGVPPLLVEDHSVVKTEppvKK 263
9999***********999887788999************9*********998255677777888999988765..344444444444444444411123 PP
GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
+++ rq+ ++pk++k kk+kk ++++++ + +++ +r + +kk++++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++
Do018324.1 264 RQQGRQQDRQPKSPKPKKPKK-AAVPREDGTINGHAPRGRGPKKTVGMVINGIELDLSNIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMN 361
334457889999999999999.88999*******99*************************************************************** PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tkrrgaRiagrKmSqgafkk+LekL +eGy+lsnp+DLk++WAkHGtnkfv ir
Do018324.1 362 TKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLSNPIDLKTFWAKHGTNKFVIIR 415
****************************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
LLQPRPRLSF LAATTGRAAA PFAGPFASDE HPTEWVVQGL VIGGQFRRWA DQSHSRFGFL 60
LPVDLLIPQS EMDDDGSLGI RNWGFYDPVK SDLGLQLMSS MPADRDTKSL LPAGAFLQQH 120
GHHNAPHQLH SHHSRDSNGG GASGGMPTEP HSIHMDFSRN EAWLHPSHHQ HPREQKVLHA 180
RPVGPAGHVG HPRHGGHPGN GGHAVHHHPT GYGMMPDAPH TLQMMQPQLQ SQLQEPPPCK 240
EDGVPPLLVE DHSVVKTEPP VKKRQQGRQQ DRQPKSPKPK KPKKAAVPRE DGTINGHAPR 300
GRGPKKTVGM VINGIELDLS NIPTPVCSCT GAPQQCYRWG AGGWQSACCT TSISTYPLPM 360
NTKRRGARIA GRKMSQGAFK KVLEKLVGEG YNLSNPIDLK TFWAKHGTNK FVIIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
