PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018169.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 374aa MW: 40840.9 Da PI: 6.5994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018169.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.7e-06	214	233	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Do018169.1 214 FICHVCNKTFNRYNNMQMHM 233 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.63E-5	210	237	No hit	No description
PROSITE profile	PS50157	10.201	214	241	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-5	214	233	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	216	236	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.12E-5	282	318	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGLRACAMEG GEAVGSPFFQ WLKPRCSSAS WSSSASMASG HQVVVLGDQE GQAGGGGGGV 60 PEVSSMTCLP LLSRLGEGKG TDDHKEYPVK EEIISGGSSG NLAQSGVDLN IGLPVGGSCI 120 EDAIMEEKDD DDEEEDNEVE EEDDDEGEWK HMHGGFKVEG MDQPEHGEVV ASVEGSNSNG 180 LGEFGVLGAD SGLPIGCRYW IPTPAQILIG PVQFICHVCN KTFNRYNNMQ MHMWGHGREY 240 RKGPESLKGT QTLAMLKLPC FCCAPGCKNN IAHPRARPLK DFRTLQTHYK RKHGAKPFRC 300 RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGADHC PVDEPAAAAA 360 PAVNDRRIIR FHNR

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGLRACAMEG GEAVGSPFFQ WLKPRCSSAS WSSSASMASG HQVVVLGDQE GQAGGGGGGV  60
PEVSSMTCLP LLSRLGEGKG TDDHKEYPVK EEIISGGSSG NLAQSGVDLN IGLPVGGSCI  120
EDAIMEEKDD DDEEEDNEVE EEDDDEGEWK HMHGGFKVEG MDQPEHGEVV ASVEGSNSNG  180
LGEFGVLGAD SGLPIGCRYW IPTPAQILIG PVQFICHVCN KTFNRYNNMQ MHMWGHGREY  240
RKGPESLKGT QTLAMLKLPC FCCAPGCKNN IAHPRARPLK DFRTLQTHYK RKHGAKPFRC  300
RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGADHC PVDEPAAAAA  360
PAVNDRRIIR FHNR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018169.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064334	0.0	AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819090.1	0.0	protein TRANSPARENT TESTA 1-like
TrEMBL	A0A1E5UZU8	0.0	A0A1E5UZU8_9POAL; Zinc finger protein WIP5
STRING	Pavir.J31116.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-94	WIP domain protein 5