PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018092.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 268aa    MW: 29357.1 Da    PI: 7.2203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018092.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1994144255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a+++a+ +l+g
  Do018092.1  94 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFRLRG 144
                 7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1394144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-3294153IPR001471AP2/ERF domain
CDDcd000182.80E-2894153No hitNo description
PROSITE profilePS5103224.68494152IPR001471AP2/ERF domain
SMARTSM003805.1E-3794158IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2394153IPR016177DNA-binding domain
PRINTSPR003677.6E-1495106IPR001471AP2/ERF domain
PRINTSPR003677.6E-14134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALLREHLDL IRAHLLEDRH DAAASSEDSA SSPSPSPPAG RRPLPALSVA LPPRPAVAQH  60
QQQQQLWAAL PPQIHYQQEQ HYCCPEPEED DFRRYRGVRQ RPWGKYAAEI RDPARKGARV  120
WLGTYDTAVE AARAYDRAAF RLRGSKAILN FPNEVAFGSA ARWGPPASAA APYPNVTAAG  180
SNKRARSPEQ ERDAGCMMRE VKKERVQEPA AVASCGWDGM AMAPTAASGG ADFWEEEELL  240
KGMICSLPPL SPLSSPHPHL AFPELSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2895158669ATERF1
3gcc_A3e-2895158669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796155.11e-102ethylene-responsive transcription factor ERF105-like
TrEMBLA0A1E5V7H80.0A0A1E5V7H8_9POAL; Uncharacterized protein
STRINGPavir.Ib02259.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-22ERF family protein