PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017994.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 289aa MW: 30867.9 Da PI: 4.9714

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017994.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.9	3e-30	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtp+LH+rFv av+qLGG++kAtPk++l++m v+ Ltl+++kSHLQkYRl Do017994.1 23 TRLRWTPQLHNRFVLAVAQLGGADKATPKSVLRAMAVPQLTLYNLKSHLQKYRL 76 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-30	20	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-16	22	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-22	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-5	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	7.4E-16	141	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSSSDGGGGG GGGQQQQGGE ARTRLRWTPQ LHNRFVLAVA QLGGADKATP KSVLRAMAVP 60 QLTLYNLKSH LQKYRLAVSR GLIANLPGDD GEGPNDRSSS SQSQTDEYDE DAAAKLRSAF 120 AADDGADTEE ALCDSPRSMA RMQREVQRKL QEQIEVQRHL QLRIEAQGRY LQSVLRRAQE 180 VLADHSLGSP AAKAELSELA SAVETGCLSS CSSLSPSPPR HRSADSCVTS SSSEAESQAA 240 AGSKRPCTCT VEQPVQQGKR TFVLQSHDAA EEADEEAEDG SSSEIDLNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	22	77	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	22	77	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	22	77	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	22	77	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017994.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095207	9e-71	FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973515.1	1e-126	myb family transcription factor PHL8
TrEMBL	A0A1E5VR89	0.0	A0A1E5VR89_9POAL; Myb-related protein 2
STRING	Si014218m	1e-125	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	2e-45	G2-like family protein