PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017955.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 355aa    MW: 38031.1 Da    PI: 10.7393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017955.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000454870123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C  Cg+sF++   L  H  +H
  Do017955.1 48 FRCRTCGRSFPTFQALGGHRTSH 70
                89**********99998888777 PP
2zf-C2H213.70.0001997119123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg+ F++   L  H+r+H
  Do017955.1  97 HRCSACGMAFTTGQALGGHMRRH 119
                 79********************9 PP
3zf-C2H211.30.0011297319123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C  Cg  Fs+   L  H+r+H
  Do017955.1 297 HACAMCGLGFSTGQALGGHMRRH 319
                 67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.7E-54674No hitNo description
PfamPF139121.6E-104772IPR007087Zinc finger, C2H2
SMARTSM003550.0984870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6994875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139121.9E-996121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-896119No hitNo description
PROSITE profilePS5015710.03497119IPR007087Zinc finger, C2H2
SMARTSM003550.02397119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-8253280No hitNo description
SMARTSM003550.48258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263258285IPR007087Zinc finger, C2H2
PfamPF139124.8E-9258282IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
PfamPF139123.4E-8296321IPR007087Zinc finger, C2H2
SMARTSM003550.47297319IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473297324IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDMVATARNA PADSTNHRLL LLLSLSLSPA SKAIAKGGGR RLQADGAFRC RTCGRSFPTF  60
QALGGHRTSH KRPRVRADGL DLLLGARPGK GAASDVHRCS ACGMAFTTGQ ALGGHMRRHR  120
AAAFHVVTAA AAPMDEGDSL QSDDDAGHLT DKICKRSTPA QSMPEVQENT VLRRMKRARS  180
DDAIIATMGD SNSYLHGHGE EGLEEDELDQ QRAACDVLLS LSCGSSSSSS SSEGSAGTAA  240
PPLKRRPRRH RRRGVELFEC RTCGRQFATF QALGGHRTSH LRRPAKKARS KATVAAHACA  300
MCGLGFSTGQ ALGGHMRRHR SRPNCMLDSD GLTTQIIMQE SRPSSASLKL LNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340455e-42AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624915e-42AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052265e-42AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149675e-42AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058665e-42AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126195e-42CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333225e-42CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.12e-54zinc finger protein ZAT11-like
TrEMBLA0A1E5W4650.0A0A1E5W465_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-19C2H2 family protein