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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Do017955.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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| Family |
C2H2 |
| Protein Properties |
Length: 355aa MW: 38031.1 Da PI: 10.7393 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do017955.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.5 | 0.00045 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C Cg+sF++ L H +H
Do017955.1 48 FRCRTCGRSFPTFQALGGHRTSH 70
89**********99998888777 PP
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| 2 | zf-C2H2 | 13.7 | 0.00019 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cg+ F++ L H+r+H
Do017955.1 97 HRCSACGMAFTTGQALGGHMRRH 119
79********************9 PP
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| 3 | zf-C2H2 | 11.3 | 0.0011 | 297 | 319 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C Cg Fs+ L H+r+H
Do017955.1 297 HACAMCGLGFSTGQALGGHMRRH 319
67********************9 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 5.7E-5 | 46 | 74 | No hit | No description |
| Pfam | PF13912 | 1.6E-10 | 47 | 72 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.098 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.699 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.9E-9 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.66E-8 | 96 | 119 | No hit | No description |
| PROSITE profile | PS50157 | 10.034 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.023 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.66E-8 | 253 | 280 | No hit | No description |
| SMART | SM00355 | 0.48 | 258 | 280 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.263 | 258 | 285 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 4.8E-9 | 258 | 282 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 260 | 280 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 3.4E-8 | 296 | 321 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.47 | 297 | 319 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.473 | 297 | 324 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 299 | 319 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MDMVATARNA PADSTNHRLL LLLSLSLSPA SKAIAKGGGR RLQADGAFRC RTCGRSFPTF 60
QALGGHRTSH KRPRVRADGL DLLLGARPGK GAASDVHRCS ACGMAFTTGQ ALGGHMRRHR 120
AAAFHVVTAA AAPMDEGDSL QSDDDAGHLT DKICKRSTPA QSMPEVQENT VLRRMKRARS 180
DDAIIATMGD SNSYLHGHGE EGLEEDELDQ QRAACDVLLS LSCGSSSSSS SSEGSAGTAA 240
PPLKRRPRRH RRRGVELFEC RTCGRQFATF QALGGHRTSH LRRPAKKARS KATVAAHACA 300
MCGLGFSTGQ ALGGHMRRHR SRPNCMLDSD GLTTQIIMQE SRPSSASLKL LNLFV
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC134045 | 5e-42 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. |
| GenBank | AK062491 | 5e-42 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. |
| GenBank | AK105226 | 5e-42 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. |
| GenBank | AP014967 | 5e-42 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AY305866 | 5e-42 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. |
| GenBank | CP012619 | 5e-42 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
| GenBank | CT833322 | 5e-42 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
