PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017944.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 458aa    MW: 47753.1 Da    PI: 7.1421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017944.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.7e-06122144123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ Cg+sF ++     H+r+H
  Do017944.1 122 FACHVCGRSFISPKAVDGHMRVH 144
                 78*******************99 PP
2zf-C2H210.90.0015280298119
                 EEETTTTEEESSHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                 y+C+ Cgks+ ++  L  H
  Do017944.1 280 YTCKLCGKSYATHQGLGGH 298
                 9**********99888666 PP
3zf-C2H214.40.00011340362123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k+F++   L  H+r+H
  Do017944.1 340 HECQKCHKVFPSGVALGGHMRMH 362
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-4120144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.85E-8120144No hitNo description
SMARTSM003550.0027122144IPR015880Zinc finger, C2H2-like
PfamPF139120.043122144IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053122149IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576673.85E-8275302No hitNo description
SMARTSM003551280302IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-4280303IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-6337368No hitNo description
SMARTSM003550.011340362IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596340367IPR007087Zinc finger, C2H2
PfamPF139121.5E-10340363IPR007087Zinc finger, C2H2
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDSPSRRRPL RDLDGGDDLE EGEYVPGRRH ESSDTDDDDD VYRFQTRGEG EVHQEHGRRM  60
SLLEEVMASD RVAVPRSQLA SGGIAPPSLT PSCESDGTIS DDGNPSASSV ISVGPRLPAR  120
RFACHVCGRS FISPKAVDGH MRVHGSGRLA AVVGWASTGK RGWTGGKPSV ALSLNSESTD  180
NSTAIVAVHP LETNLSGKES SSAASAEPMQ YEPVATLVTG ANPSSIGAVV HQPAAPPPAA  240
EHARPVHQPT VPPPAAQQAQ FVQQPLVAPP ARAAPPPREY TCKLCGKSYA THQGLGGHAA  300
GHRNRQKEAE AAAAAAGMMA QDGSAFLAAF RRGRRAEEPH ECQKCHKVFP SGVALGGHMR  360
MHYTGPPIVH KKSKKRCLAL LPGSAVSEAD LRLALSTITE PAPAVAGRVR LFGIDIGPNV  420
QAPSEQQGSG AAEGSSSAGA QQQGSATAED SSSAGEQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017944.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682476.11e-147replication initiator 1-like
TrEMBLA0A1E5WH310.0A0A1E5WH31_9POAL; Uncharacterized protein
STRINGSi004885m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-11zinc-finger protein 2