PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017726.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 73aa MW: 8281.04 Da PI: 5.6675

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017726.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.8e-10	4	49	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT e + + av+++ ++ +W +ar++g g++ ++k ++ Do017726.1 4 SWTDEQNKVFEMAVAKYDKDtpdRWQNVAREVGGGKSVDDVKRHYK 49 7********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	11.554	1	56	IPR017884	SANT domain
SMART	SM00717	1.0E-7	1	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.58E-13	3	55	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-7	4	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-4	4	53	IPR009057	Homeodomain-like
CDD	cd00167	1.83E-6	4	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MSSSWTDEQN KVFEMAVAKY DKDTPDRWQN VAREVGGGKS VDDVKRHYKE MVQDVKEIIS 60 TGQHNQYGGS SSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-15	4	60	10	65	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017726.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627086.1	1e-28	protein RADIALIS-like 3 isoform X2
Refseq	XP_015627089.1	1e-28	protein RADIALIS-like 3 isoform X2
Refseq	XP_025878627.1	1e-28	protein RADIALIS-like 3 isoform X2
Refseq	XP_025878628.1	1e-28	protein RADIALIS-like 3 isoform X2
Refseq	XP_025878629.1	1e-28	protein RADIALIS-like 3 isoform X2
Refseq	XP_025878630.1	1e-28	protein RADIALIS-like 3 isoform X2
Refseq	XP_025878631.1	1e-28	protein RADIALIS-like 3 isoform X2
Swissprot	F4JVB8	2e-18	RADL1_ARATH; Protein RADIALIS-like 1
Swissprot	Q6NNN0	1e-18	RADL3_ARATH; Protein RADIALIS-like 3
TrEMBL	A0A1E5V8I3	1e-46	A0A1E5V8I3_9POAL; Uncharacterized protein
STRING	Pavir.Da01122.1.p	4e-30	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	6e-21	RAD-like 1

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]