PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017598.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 345aa    MW: 37273.2 Da    PI: 9.9384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017598.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-131762571198
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +++++ ++p+kfa+ +  k  +  +++l+  +g + +  +   +++++ vl++GW+ Fv+ ++++  D +vF+++g+ +f   v +f+
  Do017598.1 176 GSKSNKTIPNKFARCFRDK-FQ-GKIKLKVCNGGTCTAVV--ARYPNKLVLQAGWEAFVSTHDIRLADLLVFRYNGNLQF--EVLLFD 257
                 566779*******655544.34.48***************..********************************998777..676666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.292166259IPR003340B3 DNA binding domain
SMARTSM010190.0015170259IPR003340B3 DNA binding domain
PfamPF023621.0E-9175256IPR003340B3 DNA binding domain
CDDcd100172.38E-13176257No hitNo description
Gene3DG3DSA:2.40.330.108.3E-16179261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16180261IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAMESRQQKA DLRFLNRGHR CRRGQQMDAM TPRTRARPPL PPARPRPPGS TGWGPPSSRS  60
ATRAALSSAP SAGACEQLVP LGSLALEALD AAAQCGGFGL RFGEPRAEGG CLVPGRGGAG  120
QEAALGLHSG GAVAREDLGG ARWRGRPRGG AHQQPLLPFP RVYSILEEAA VDSLRGSKSN  180
KTIPNKFARC FRDKFQGKIK LKVCNGGTCT AVVARYPNKL VLQAGWEAFV STHDIRLADL  240
LVFRYNGNLQ FEVLLFDPSC CVKESSNVAR KSCDHVQQRH RDFTDVSSDS DDDHQSMQSP  300
GSERPTPAEK KGPNQCTKKT SRSSSTCHLN TSGTDRIYTI MCNCA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-12B3 family protein