PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017549.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 263aa    MW: 28720.1 Da    PI: 8.2111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017549.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-143841799
                E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                ++p kfa+      + +    +l+d++grsW+v l  ++  +  + ++GW++Fv+ang+ +g  +vF+  +r +  + v +f++
  Do017549.1  3 SIPPKFAAGLgAWCPWRAAAAKLRDRTGRSWDVDLHRDGDHRVSFTGRGWRSFVSANGISAGHLLVFE--RRGCLDFAVDLFDA 84
                688888877763334466789**************666666668888*********************..55788889999986 PP
2B340.54.9e-131702591598
                 -EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EEEEE- CS
          B3  15 rlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvvkvfr 98 
                  l l+k+f+e+ g  + ++++l++    g       rsW v +  + + ++ ++ +GW eF+++ngL   D +vF  l+g++++ l v++++
  Do017549.1 170 FLDLSKSFCERVGWTSSRDVELMISAAGGdsrgeqrRSWPVSV--KVSAKSGMICAGWTEFAQDNGLSLSDACVFVpLEGSHGGDLQVRIIK 259
                 57899*******888889999999988889999**********..66666667899********************6667799999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.733185IPR003340B3 DNA binding domain
SMARTSM010192.0E-5185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-15287IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-13383No hitNo description
SuperFamilySSF1019367.06E-15387IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-12384IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-14161259IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.06162261IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-10163248IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-10166259No hitNo description
PfamPF023621.5E-9170259IPR003340B3 DNA binding domain
PROSITE profilePS508639.629206261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQSIPPKFAA GLGAWCPWRA AAAKLRDRTG RSWDVDLHRD GDHRVSFTGR GWRSFVSANG  60
ISAGHLLVFE RRGCLDFAVD LFDASGCLSE RTTITSACCD NKDEADGGEE RVTETTTGNK  120
ESSNCRRRPE AAAPCSAVKR RKRSPSTATS CSGDDETLYR RIERPYQLRF LDLSKSFCER  180
VGWTSSRDVE LMISAAGGDS RGEQRRSWPV SVKVSAKSGM ICAGWTEFAQ DNGLSLSDAC  240
VFVPLEGSHG GDLQVRIIKG IAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125142RRRPEAAAPCSAVKRRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432283e-67AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807013.11e-108putative B3 domain-containing protein Os04g0346900
TrEMBLA0A1E5VKR00.0A0A1E5VKR0_9POAL; Uncharacterized protein
STRINGPavir.J34527.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.16e-11B3 family protein